YRC Public Data Repository - Protein Structure Prediction

Protein:	YNR063W
Organism:	Saccharomyces cerevisiae
Length:	607 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNR063W.

Description	E-value	Query Range	Subject Range
gi\|2262189 - gi\|2262189\|gb\|AAB63564.1\| FacB [Aspergillus oryzae]	291.0	[0..3]	[496..11]
gi\|50306193, gi\|... - gi\|50306193\|ref\|XP_453058.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642191\|emb\|CAH0190... gi\|49642191 - gi\|49642191\|emb\|CAH01909.1\| KLLA0C19228p [Kluyveromyces lactis]	285.0	[0..15]	[606..2]
gi\|2262187 - gi\|2262187\|gb\|AAB63563.1\| FacB [Aspergillus niger]	283.0	[0..3]	[483..11]
ACU15_NEUCR - Transcriptional activator protein acu-15 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS ... ACU15_NEUCR, AC1... - Transcriptional activator protein acu-15 OS=Neurospora crassa GN=acu-15 PE=1 SV=2, (P87000) Transcri...	283.0	[0..3]	[482..11]
NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1... NIT4_NEUCR - Nitrogen assimilation transcription factor nit-4 OS=Neurospora crassa GN=nit-4 PE=4 SV=2	276.0	[0..4]	[507..41]
gi\|2262191 - gi\|2262191\|gb\|AAB63565.1\| acetate regulatory DNA binding protein FacB [Emericella nidulans] gi\|67516815, gi\|... - gi\|67516815\|ref\|XP_658293.1\| hypothetical protein AN0689.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	272.0	[0..3]	[483..11]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSKDARKR SISLACTVCR KRKLKCDGNK PCGRCIRLNT PKECIYNIDK RKDKRKIKNG  60
   61 SKVFLFKNNT IDNGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1qp9A
Description:	Hap1 (Cyp1); HAP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [76-509]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSILENKGLN EDLSSHIYEK EAPKFDSDID ISRFGTNDAV IFNNDGWDTS LPIDFDFDEF  60
   61 NTETTDFDDF LKLLGDNSPS KEQKSLSYSP TATGLSGVVK ETESEDNAPT RSRLIDVLFE 120
  121 NKLHSVPGIS KWHLYELESQ YPNLECTEGN SDEKFLLSTV LCLGSLTIRK RELLNHSNID 180
  181 NRPLLPENSI SKLTTDAFKY YNAAKTLVPD LLSHPTIDGF CGLVLMANFM TMMISLEHQL 240
  241 YLSINALQLA VALNLNNNTK CKELLESNSD GIGVILLFWN IWCSSCMLAT IHGKNPFITL 300
  301 EQITTPLPCE ISPRNKTNKL LIDFMQIRIK LATLQSKIFQ RLYTSSTANE VPFVNLEREF 360
  361 EEVSLQITRL KGFPIFEEHL FYRSRVLMLE LSCLRAQASF LLYRPYLITG ESLQAVTMAK 420
  421 SIIHEIWSQY TKQF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [510-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDNEKERHER LDWNFCYPLR TASLTLCISC IILLRYKQVV QFLKGTELFE YILALEILQD  60
   61 LVQVLPIEQN LIDIIKYPIS PVQLSGDSFV EFWGRILY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.816	a.24.17	Group V grass pollen allergen

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits