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View Structure Prediction Details

Protein: ESF2
Organism: Saccharomyces cerevisiae
Length: 316 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESF2.

Description E-value Query
Range
Subject
Range
ESF2 - Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase ...
gi|207341539 - gi|207341539|gb|EDZ69566.1| YNR054Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|151944582 - gi|151944582|gb|EDN62860.1| 18S rRNA processing factor [Saccharomyces cerevisiae YJM789]
gi|190408948 - gi|190408948|gb|EDV12213.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
ESF2_YEAST - Pre-rRNA-processing protein ESF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ESF2 PE...
3.0E-61 [1..316] [1..316]
esf2 - U3 snoRNP-associated protein Esf2
ESF2_SCHPO - Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf2 PE=1...
2.0E-58 [3..308] [11..310]
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
gi|109087089 - gi|109087089|ref|XP_001098239.1| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca...
gi|123993665, gi... - gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct], gi|123999981|gb|...
gi|194036975 - gi|194036975|ref|XP_001927782.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind...
PABPC1 - poly(A) binding protein, cytoplasmic 1
gi|73974130, gi|... - gi|73974178|ref|XP_857695.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
9.0E-58 [2..312] [188..477]
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
1.0E-57 [2..312] [188..477]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1
1.0E-57 [2..312] [188..477]
gi|2665654 - gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
1.0E-54 [3..313] [189..484]
gi|64970 - gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
7.0E-54 [2..313] [188..474]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKVNSDFE DFSSDEETDQ HNVLIQTKKK ISSKDDIFSK KVEDIESENE SDIEEEQKQE  60
   61 EKEDVEQPDK ENGEKLDREV EEQASSTTSL DLKTEKLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 1up1__
Description: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [99-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLVKSKAAKK SKHKTGVVYF SSIPPYMKPA KMRQILTRFG EVDRLFLKKE DDQKYKQRVK  60
   61 GGGNKKNKYE EGWAEFIRKR DAKLCAETLN GNIIGGKKG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 1up1__
Description: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [198-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFYHDDILNV KYLPGFKWAD LTEQIAREND IRQAKLEMEI SQANKLNAEF IRNVEQSKMI  60
   61 QNIKNSRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 1qm9A_
Description: Polypyrimidine tract-binding protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [266-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAGKEGESAD SHPHREFKQR RVETSRANAP SDIKQQSSGS KDLGNVLTNL L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1g9lA_
Description: poly(A) binding protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle