YRC Public Data Repository - Protein Structure Prediction

Protein:	MSO1
Organism:	Saccharomyces cerevisiae
Length:	210 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSO1.

Description	E-value	Query Range	Subject Range
gi\|190408953 - gi\|190408953\|gb\|EDV12218.1\| protein MSO1 [Saccharomyces cerevisiae RM11-1a] MSO1 - Probable component of the secretory vesicle docking complex, acts at a late step in secretion; shows... MSO1_YEAST - Protein MSO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSO1 PE=1 SV=1	8.0E-80	[1..210]	[1..210]
gi\|5815154 - gi\|5815154\|gb\|AAD52573.1\|AF170311_1 unknown protein [Saccharomyces kluyveri]	5.0E-55	[12..210]	[7..182]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSQVSHSQE GSGRFWNKFK SSTKSLSTSL AHLSIKAEKD GDTVNTTLVH KGLVKFYENQ  60
   61 HPFQGFPGWL GEKEDLPNER KILDTQVKHD MKKQNSRHFS PSFSNRRKAS SEDPMGTPSS 120
  121 NGNTPEYTPA SKSFQDIYNN HTSSSSATPR RASSRPTRPS AGQEFRASLG RSKTSNSFNT 180
  181 SSTPTPPPDA SSGVMAMKDR LKRRNNDYGF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits