YRC Public Data Repository - Protein Structure Prediction

Protein:	TRM112
Organism:	Saccharomyces cerevisiae
Length:	135 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM112.

Description	E-value	Query Range	Subject Range
TR112_YEAST - Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... gi\|190408956 - gi\|190408956\|gb\|EDV12221.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151944574 - gi\|151944574\|gb\|EDN62852.1\| tRNA methyltransferase [Saccharomyces cerevisiae YJM789] TRM112 - Subunit of tRNA methyltransferase (MTase) complexes in combination with Trm9p and Trm11p; subunit of...	2.0E-53	[1..135]	[1..135]
gi\|50306129, gi\|... - gi\|50306129\|ref\|XP_453026.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642159\|emb\|CAH0187... gi\|6967027, gi\|4... - gi\|6967027\|emb\|CAB72434.1\| hypothetical protein [Kluyveromyces lactis], gi\|49642159\|emb\|CAH01877.1\| ...	3.0E-49	[1..134]	[1..131]
gi\|123997575, gi... - gi\|123997575\|gb\|ABM86389.1\| hypothetical protein HSPC152 [synthetic construct], gi\|123982892\|gb\|ABM8... gi\|114638305, gi... - gi\|114638305\|ref\|XP_001164844.1\| PREDICTED: similar to adrenal gland protein AD-001 isoform 1 [Pan t... TRMT112 - tRNA methyltransferase 11-2 homolog (S. cerevisiae)	2.0E-42	[1..130]	[1..118]
gi\|16740612 - gi\|16740612\|gb\|AAH16191.1\| 0610038D11Rik protein [Mus musculus]	1.0E-41	[1..130]	[1..118]
trm112 - tRNA (guanine-N2-)-methyltransferase regulatory subunit Trm112 TR112_SCHPO - Multifunctional methyltransferase subunit trm112 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	3.0E-40	[1..130]	[1..121]
T112B_ARATH - Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=A...	8.0E-40	[1..130]	[1..119]
TR112_NEUCR - Multifunctional methyltransferase subunit trm112 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1... U315_NEUCR, TR11... - (Q8X0S4) Hypothetical UPF0315 protein 18F11.160, Protein trm-112 OS=Neurospora crassa GN=trm-112 PE=...	1.0E-39	[1..135]	[1..127]
CE15587 - status:Partially_confirmed UniProt:O45241 protein_id:CAB03840.1	1.0E-33	[1..129]	[1..119]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLTTNFLK CSVKACDTSN DNFPLQYDGS KCQLVQDESI EFNPEFLLNI VDRVDWPAVL  60
   61 TVAAELGNNA LPPTKPSFPS SIQELTDDDM AILNDLHTLL LQTSIAEGEM KCRNCGHIYY 120
  121 IKNGIPNLLL PPHLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.376751
Match:	PF03966
Description:	Trm112p-like protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits