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View Structure Prediction Details

Protein: DBP6
Organism: Saccharomyces cerevisiae
Length: 629 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP6.

Description E-value Query
Range
Subject
Range
DDX3_XENLA - Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1
0.0 [11..606] [19..619]
gi|10039327 - gi|10039327|dbj|BAB13306.1| PL10-related protein CnPL10 [Hydra magnipapillata]
0.0 [17..620] [20..582]
gi|13514813, gi|... - gi|2580552|gb|AAC51830.1| dead box, X isoform [Homo sapiens], gi|2580550|gb|AAC51829.1| dead box, X ...
0.0 [11..605] [19..577]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3
0.0 [11..603] [19..575]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [11..603] [19..575]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [11..606] [19..619]
gi|3641 - gi|3641|emb|CAA39465.1| DBP1 [Saccharomyces cerevisiae]
0.0 [16..605] [14..548]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASRFDPSQ LTAPAASAPE GIVGTTPPAI VPLKRQATES DNEEYGSHQD SDESSNSSSE  60
   61 EDEDRMQVDY GASEEDSSEV EEEESKPSTH STVLSRFKQT VSLQERLGAS DIAESKEDEG 120
  121 IEDEAASTHQ LKQIPQPEFV KNPMNLNTNS LQFKSTGWLN TEKIYYDNS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-410]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIKPFSDYAN ELEAKLLQNI CKNFSTNTFP IQSIILDSIL PVLNFTLNVS KRNFTRRIGD  60
   61 ILVNAATGSG KTLAYSIPIV QTLFKRQINR LRCIIIVPTK LLINQVYTTL TKLTQGTSLI 120
  121 VSIAKLENSL KDEHKKLSNL EPDILITTPG RLVDHLNMKS INLKNLKFLI IDEADRLLNQ 180
  181 SFQGWCPKLM SHLKTDKLDT LPGNVIKMIF SATLTTNTEK LNGLNLYKPK LFLKQTDKLY 240
  241 Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 395.9897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [411-629]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPNKLNEFNI NIPTAKSVYK PLILLYSICQ FMAHSPIAAK ILIFVKSNES SIRLSKLLQL  60
   61 ICESRSQSSV LKNLQNLAVS INSVNSNNSK AENKKIVANF SHHSESAGIT ILITTDIMSR 120
  121 GIDINDITQV INYDPPMSSQ QYVHRVGRTA RANELGSAYN LLVGRGERTF FDDLNKDLDR 180
  181 DGKSVQPLEL DFTLLESDSE LYTSSLESLK NYHNNTAQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 395.9897
Match: 1hv8A_
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle