YRC Public Data Repository - Protein Structure Prediction

Protein:	SOL1
Organism:	Saccharomyces cerevisiae
Length:	321 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOL1.

Description	E-value	Query Range	Subject Range
SOL1 - Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catal... gi\|190408968 - gi\|190408968\|gb\|EDV12233.1\| hypothetical protein SCRG_03108 [Saccharomyces cerevisiae RM11-1a] SOL1_YEAST - 6-phosphogluconolactonase-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151944562 - gi\|151944562\|gb\|EDN62840.1\| suppressor of los1-1 [Saccharomyces cerevisiae YJM789] gi\|207341559 - gi\|207341559\|gb\|EDZ69581.1\| YNR034Wp-like protein [Saccharomyces cerevisiae AWRI1631]	7.0E-97	[1..321]	[1..321]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-84	[1..314]	[1..310]
6PGL2_ARATH - Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana GN=At3g49360 PE=2 SV=2	3.0E-69	[60..304]	[4..251]
gi\|14009294 - gi\|14009294\|gb\|AAK50346.1\| putative 6-phosphogluconolactonase [Brassica carinata]	2.0E-67	[61..304]	[8..258]
GNPI2_MOUSE - Glucosamine-6-phosphate isomerase 2 OS=Mus musculus GN=Gnpda2 PE=1 SV=1	2.0E-64	[60..311]	[1..254]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTVPKVFA FHEFAGVAEA VADHVIHAQN SALKKGKVSR STQMSGTSLN GNGNTESKTM  60
   61 ERVNSVRSNA SSRGGSEDGA TKKLKKEKER RFKIALSGGS LIQVLHEGLL KRDDVQWGKW 120
  121 DIYFADERLV PFSSSESNYG LAKRKIFDLI DTEKYGTPKI YHIDESLIND PQECADNYEK 180
  181 ILIKGFAGRD SVKLPMFDLF LLGCAPDGHI ASLFPNFQEN LRENLAWVIP VENAPSGPSN 240
  241 RISLTIPVIC HSHRVTFVVE GATKAPVIKT IMERPEKGLP SSIVNEGAAG RVSWFVDDDA 300
  301 LKDVFVIKKK YKFYDDENLT E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	1d9tA_
Description:	No description for 1d9tA_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits