| Protein: | ARE2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 642 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARE2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..642] | [1..642] |
|
|
0.0 | [111..638] | [33..518] |
|
|
0.0 | [189..638] | [87..487] |
|
|
0.0 | [135..638] | [69..520] |
|
|
0.0 | [187..638] | [104..506] |
|
|
0.0 | [177..640] | [62..484] |
|
|
0.0 | [151..639] | [84..545] |
|
Region A: Residues: [1-133] |
1 11 21 31 41 51
| | | | | |
1 MDKKKDLLEN EQFLRIQKLN AADAGKRQSI TVDDEGELYG LDTSGNSPAN EHTATTITQN 60
61 HSVVASNGDV AFIPGTATEG NTEIVTEEVI ETDDNMFKTH VKTLSSKEKA RYRQGSSNFI 120
121 SYFDDMSFEH RPS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.221 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.270 | c.47.1 | Thioredoxin-like |
| View | Download | 0.415 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.375 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.415 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.375 | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.277 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.277 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.270 | c.47.1 | Thioredoxin-like |
| View | Download | 0.221 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.201 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [134-318] |
1 11 21 31 41 51
| | | | | |
1 ILDGSVNEPF KTKFVGPTLE KEIRRREKEL MAMRKNLHHR KSSPDAVDSV GKNDGAAPTT 60
61 VPTAATSETV VTVETTIISS NFSGLYVAFW MAIAFGAVKA LIDYYYQHNG SFKDSEILKF 120
121 MTTNLFTVAS VDLLMYLSTY FVVGIQYLCK WGVLKWGTTG WIFTSIYEFL FVIFYMYLTE 180
181 NILKL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.561 | 0.931 | sterol metabolic process | a.26.1 | 4-helical cytokines |
| View | Download | 0.800 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.800 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.790 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.561 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.500 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.456 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.456 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.418 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.412 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.389 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.388 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.368 | N/A | N/A | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.366 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.357 | N/A | N/A | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.354 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.347 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.344 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.343 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.338 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.333 | N/A | N/A | d.173.1 | Methionine synthase activation domain-like |
| View | Download | 0.309 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.305 | N/A | N/A | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.296 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.294 | N/A | N/A | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.293 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.292 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.283 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.280 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.275 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.273 | N/A | N/A | f.25.1 | Cytochrome c oxidase subunit III-like |
| View | Download | 0.273 | N/A | N/A | c.1.10 | Aldolase |
| View | Download | 0.272 | N/A | N/A | f.21.1 | Transmembrane di-heme cytochromes |
| View | Download | 0.266 | N/A | N/A | f.1.3 | delta-Endotoxin (insectocide), N-terminal domain |
| View | Download | 0.251 | N/A | N/A | c.55.3 | Ribonuclease H-like |
| View | Download | 0.250 | N/A | N/A | a.47.1 | STAT |
| View | Download | 0.250 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.243 | N/A | N/A | f.31.1 | Photosystem I reaction center subunit XI, PsaL |
| View | Download | 0.242 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.239 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.239 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.231 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.231 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.225 | N/A | N/A | f.35.1 | Multidrug efflux transporter AcrB transmembrane domain |
| View | Download | 0.225 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.221 | N/A | N/A | a.63.1 | Apolipophorin-III |
| View | Download | 0.218 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.217 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.214 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.213 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.212 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.210 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.209 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.209 | N/A | N/A | a.47.1 | STAT |
| View | Download | 0.207 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.206 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.206 | N/A | N/A | a.172.1 | Helical scaffold and wing domains of SecA |
| View | Download | 0.204 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.200 | N/A | N/A | c.55.3 | Ribonuclease H-like |
|
Region A: Residues: [319-397] |
1 11 21 31 41 51
| | | | | |
1 HWLSKIFLFL HSLVLLMKMH SFAFYNGYLW GIKEELQFSK SALAKYKDSI NDPKVIGALE 60
61 KSCEFCSFEL SSQSLSDQT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.854 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.782 | a.47.2 | t-snare proteins |
| View | Download | 0.769 | a.47.2 | t-snare proteins |
| View | Download | 0.735 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.730 | a.16.1 | S15/NS1 RNA-binding domain |
|
Region A: Residues: [398-642] |
1 11 21 31 41 51
| | | | | |
1 QKFPNNISAK SFFWFTMFPT LIYQIEYPRT KEIRWSYVLE KICAIFGTIF LMMIDAQILM 60
61 YPVAMRALAV RNSEWTGILD RLLKWVGLLV DIVPGFIVMY ILDFYLIWDA ILNCVAELTR 120
121 FGDRYFYGDW WNCVSWADFS RIWNIPVHKF LLRHVYHSSM SSFKLNKSQA TLMTFFLSSV 180
181 VHELAMYVIF KKLRFYLFFF QMLQMPLVAL TNTKFMRNRT IIGNVIFWLG ICMGPSVMCT 240
241 LYLTF
|
| Detection Method: | |
| Confidence: | 130.823909 |
| Match: | PF01800 |
| Description: | No description for PF01800 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [488-587] |
1 11 21 31 41 51
| | | | | |
1 DIVPGFIVMY ILDFYLIWDA ILNCVAELTR FGDRYFYGDW WNCVSWADFS RIWNIPVHKF 60
61 LLRHVYHSSM SSFKLNKSQA TLMTFFLSSV VHELAMYVIF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [588-642] |
1 11 21 31 41 51
| | | | | |
1 KKLRFYLFFF QMLQMPLVAL TNTKFMRNRT IIGNVIFWLG ICMGPSVMCT LYLTF
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
