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View Structure Prediction Details

Protein: CSE2
Organism: Saccharomyces cerevisiae
Length: 149 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSE2.

Description E-value Query
Range
Subject
Range
MED9_CANGA - Mediator of RNA polymerase II transcription subunit 9 OS=Candida glabrata GN=CSE2 PE=3 SV=1
MED9_CANGA - Mediator of RNA polymerase II transcription subunit 9 OS=Candida glabrata (strain ATCC 2001 / CBS 13...
113.0 [0..10] [149..13]
MED9_ASHGO - Mediator of RNA polymerase II transcription subunit 9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 10...
MED9_ASHGO - Mediator of RNA polymerase II transcription subunit 9 OS=Ashbya gossypii GN=CSE2 PE=3 SV=1
89.0 [0..56] [148..24]
MED9_KLULA - Mediator of RNA polymerase II transcription subunit 9 OS=Kluyveromyces lactis (strain ATCC 8585 / CB...
MED9_KLULA - Mediator of RNA polymerase II transcription subunit 9 OS=Kluyveromyces lactis GN=CSE2 PE=3 SV=1
71.0 [0..56] [149..29]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQNNVLNQ IHQILLPTNP TLDKPNAEAT KEEFSSAENR DEKDYLTNQQ PKNLSTPSTS  60
   61 SNGEFIPHIF YSLHQIRKDP NNLSNQLETL TGSIRHRLKL CKSLISENED TKDLLSKSPS 120
  121 EWQDIIHQRE QELQIKRDVL DDLYRKLQR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 33.267606
Match: PF07544.4
Description: No description for PF07544.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle