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View Structure Prediction Details

Protein: NRM1
Organism: Saccharomyces cerevisiae
Length: 249 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRM1.

Description E-value Query
Range
Subject
Range
NRM1_YEAS7 - Transcription factor NRM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NRM1 PE=3 SV=1
gi|207341590 - gi|207341590|gb|EDZ69600.1| YNR009Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408990 - gi|190408990|gb|EDV12255.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
NRM1_YEAST - Transcription factor NRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRM1 PE=1 SV=1
NRM1 - Transcriptional co-repressor of MBF (MCB binding factor)-regulated gene expression; Nrm1p associates...
0.0 [1..249] [1..249]
gi|9628389, gi|8... - gi|9628389|ref|NP_042980.1| U87 [Human herpesvirus 6A], gi|854064|emb|CAA58336.1| U87 [Human herpesv...
0.008 [122..222] [473..567]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.009 [122..222] [574..668]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIMKQRLPL GEFSSSKINK LAIANIADAS EPRNHGENNV GTVCLPSIKS LMVSPEVYEN  60
   61 TKSLPVPLMR SSGGGMACAS KSSCQDGIST KTTSRDYSEL SKKLQIRLQF AYYKYKTKQT 120
  121 DKNFTDLKSK HSITRPSKVA THSKSEPLTR RRKLVLSQGH YKTPARSKIK TPSSICSHDN 180
  181 TSSFTSFRGV SESSSTTADM NVADTTTPIR NNINTKHSNS HNRTLYQRQE TPTSIKAAKS 240
  241 LIHLFTSNQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle