| Protein: | LRO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 661 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRO1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..661] | [1..661] |
|
|
0.0 | [69..657] | [46..616] |
|
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0.0 | [156..657] | [92..667] |
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0.0 | [159..644] | [21..418] |
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0.0 | [159..644] | [33..430] |
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0.0 | [159..643] | [33..429] |
|
Region A: Residues: [1-125] |
1 11 21 31 41 51
| | | | | |
1 MGTLFRRNVQ NQKSDSDENN KGGSVHNKRE SRNHIHHQQG LGHKRRRGIS GSAKRNERGK 60
61 DFDRKRDGNG RKRWRDSRRL IFILGAFLGV LLPFSFGAYH VHNSDSDLFD NFVNFDSLKV 120
121 YLDDW
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.443 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
|
Region A: Residues: [126-221] |
1 11 21 31 41 51
| | | | | |
1 KDVLPQGISS FIDDIQAGNY STSSLDDLSE NFAVGKQLLR DYNIEAKHPV VMVPGVISTG 60
61 IESWGVIGDD ECDSSAHFRK RLWGSFYMLR TMVMDK
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.692 | 0.020 | endoplasmic reticulum | a.74.1 | Cyclin-like |
| View | Download | 0.600 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.500 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.438 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.435 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.433 | N/A | N/A | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.419 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.396 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.394 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.367 | N/A | N/A | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.349 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.349 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.325 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.317 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.312 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.307 | N/A | N/A | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.304 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.303 | N/A | N/A | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.291 | N/A | N/A | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.277 | N/A | N/A | d.41.2 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain |
| View | Download | 0.272 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.269 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.254 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.252 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.244 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.244 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.243 | N/A | N/A | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.242 | N/A | N/A | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.236 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.233 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.231 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.218 | N/A | N/A | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.216 | N/A | N/A | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.213 | N/A | N/A | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.212 | N/A | N/A | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.201 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.200 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [222-392] |
1 11 21 31 41 51
| | | | | |
1 VCWLKHVMLD PETGLDPPNF TLRAAQGFES TDYFIAGYWI WNKVFQNLGV IGYEPNKMTS 60
61 AAYDWRLAYL DLERRDRYFT KLKEQIELFH QLSGEKVCLI GHSMGSQIIF YFMKWVEAEG 120
121 PLYGNGGRGW VNEHIDSFIN AAGTLLGAPK AVPALISGEM KDTIQLNTLA M
|
| Detection Method: | |
| Confidence: | 9.89 |
| Match: | 1ex9A |
| Description: | Lipase |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [393-602] |
1 11 21 31 41 51
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1 YGLEKFFSRI ERVKMLQTWG GIPSMLPKGE EVIWGDMKSS SEDALNNNTD TYGNFIRFER 60
61 NTSDAFNKNL TMKDAINMTL SISPEWLQRR VHEQYSFGYS KNEEELRKNE LHHKHWSNPM 120
121 EVPLPEAPHM KIYCIYGVNN PTERAYVYKE EDDSSALNLT IDYESKQPVF LTEGDGTVPL 180
181 VAHSMCHKWA QGASPYNPAG INVTIVEMKH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [603-661] |
1 11 21 31 41 51
| | | | | |
1 QPDRFDIRGG AKSAEHVDIL GSAELNDYIL KIASGNGDLV EPRQLSNLSQ WVSQMPFPM
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.644 | a.4.1 | Homeodomain-like |
| View | Download | 0.509 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.640 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.486 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.474 | a.64.2 | Bacteriocin AS-48 |
| View | Download | 0.442 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.355 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.342 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.328 | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.321 | d.42.1 | POZ domain |
| View | Download | 0.318 | a.28.1 | ACP-like |
| View | Download | 0.307 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.297 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.293 | a.4.1 | Homeodomain-like |
| View | Download | 0.288 | a.4.1 | Homeodomain-like |
| View | Download | 0.284 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.272 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.268 | a.140.2 | SAP domain |
| View | Download | 0.263 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.248 | b.48.1 | mu transposase, C-terminal domain |
| View | Download | 0.238 | a.4.1 | Homeodomain-like |
| View | Download | 0.214 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.212 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.210 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.207 | a.3.1 | Cytochrome c |
| View | Download | 0.201 | b.5.1 | alpha-Amylase inhibitor tendamistat |
| View | Download | 0.201 | a.35.1 | lambda repressor-like DNA-binding domains |
