| Protein: | YRF1-6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1859 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRF1-6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [637..1859] | [1..1224] |
|
|
0.0 | [179..1859] | [1..1681] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MEIENEQICT CIAQILHLLN SLIITFLDDD KTETGQSFVY IDGFLVKKHN NQHTIVNFET 60
61 YKNKMKVSDR RKFEKANFDE FESALNNKND LVHCPSITLF ESIPTEVRSF YEDEKSGLIK 120
121 VVKFRTGAMD RKRSFEKIVV SVMVGKNVQK FLTFVEDEPD FQGGPIPSKY LIPKKINLMV 180
181 YTLFQVHTLK FNRKDYDTLS LFYLNR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [207-800] |
1 11 21 31 41 51
| | | | | |
1 GYYNELSFRV LERCYEIASA RPNDSSTMRT FTDFVSGTPI VRGLQKSTIR KYGYNLAPYM 60
61 FLLLHVDELS IFSAYQASLP GEKKVDTERL KRDLCPRKPT EIKYFSQICN DMMNKKDRLG 120
121 DILHIILRAC ALNFGAGPRG GAGDEEDRSI TNEEPIIPSV DEHGLKVCKL RSPNTPRRLR 180
181 KTLDAVKALL VSSCACTARD LDIFDDNNGV AMWKWIKILY HEVAQETALK DSYRITLVPS 240
241 SDGVSVCGKL FNREYVRGFY FACKAQFDNL WEELNDCFYM PTVVDIASLI LRNREVLFRE 300
301 PKRGIDEYLE NDSFLQMIPV KYREIVLPKL RRDTNKMTAA LKNKVTVAID ELTVPLMWMI 360
361 HFAVGYPYRY PELQLLAFAG PQRNVYVDDT TRRIQLYTDY NKNGSSEPRL KTLDGLTSDY 420
421 VFYFVTVLRQ MQICALGNSY DAFNHDPWMD VVGFEDPDQV TNRDISRIVL YSYMFLNTAK 480
481 GCLVEYATFR QYMRELPKNA PQKLNFREMR QGLIALGRHC VGSRFETDLY ESATSELMAN 540
541 HSVQTGRNIY GVDSFSLTSV SGTTATLLQE RASERWIQWL GLESDYHCSF SSTR
|
| Detection Method: | |
| Confidence: | 8.59 |
| Match: | 1mukA |
| Description: | Reovirus polymerase lambda3 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [801-1256] |
1 11 21 31 41 51
| | | | | |
1 NAEDVVAGEA ASSDHHQKIS RVTRKRPREP KSTNDILVAG QKLFGSSFEF RDLHQLRLCH 60
61 EIYMADTPSV AVQAPPGYGK TELFHLPLIA LASKGDVKYV SFLFVPYTVL LANCMIRLSR 120
121 CGCLNVAPVR NFIEEGCDGV TDLYVGIYDD LASTNFTDRI AAWENIVECT FRTNNVKLGY 180
181 LIVDEFHNFE TEVYRQSQFG GITNLDFDAF EKAIFLSGTA PEAVADAALQ RIGLTGLAKK 240
241 SMDINELKRS EDLSRGLSSY PTRMFNLIKE KSEVPLGHVH KIWKKVESQP EEALKLLLAL 300
301 FEIEPESKAI VVASTTNEVE ELACSWRKYF RVVWIHGKLG AAEKVSRTKE FVTDGSMRVL 360
361 IGTKLVTEGI DIKQLMMVIM LDNRLNIIEL IQGVGRLRDG GLCYLLSRKN SWAARNRKGE 420
421 LPPIKEGCIT EQVREFYGLE SKKGKKGQHV GCCGSR
|
| Detection Method: | |
| Confidence: | 161.9897 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1257-1311] |
1 11 21 31 41 51
| | | | | |
1 TDLSADTVEL IERMDRLAEK QATASMSIVA LPSSFQESNS SDRCRKYCSS DEDSD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.564 | 0.916 | DNA helicase activity | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.585 | 0.916 | DNA helicase activity | a.5.2 | UBA-like |
| View | Download | 0.499 | 0.916 | DNA helicase activity | d.45.1 | ClpS-like |
| View | Download | 0.516 | 0.916 | DNA helicase activity | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.447 | 0.916 | DNA helicase activity | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.442 | 0.916 | DNA helicase activity | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.411 | 0.916 | DNA helicase activity | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.409 | 0.916 | DNA helicase activity | a.5.2 | UBA-like |
| View | Download | 0.393 | 0.916 | DNA helicase activity | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.379 | 0.916 | DNA helicase activity | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.364 | 0.916 | DNA helicase activity | a.60.1 | SAM/Pointed domain |
| View | Download | 0.355 | 0.916 | DNA helicase activity | a.4.1 | Homeodomain-like |
| View | Download | 0.349 | 0.916 | DNA helicase activity | a.144.1 | PABC (PABP) domain |
| View | Download | 0.317 | 0.916 | DNA helicase activity | a.5.2 | UBA-like |
| View | Download | 0.317 | 0.916 | DNA helicase activity | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.298 | 0.916 | DNA helicase activity | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.261 | 0.916 | DNA helicase activity | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.251 | 0.916 | DNA helicase activity | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.229 | 0.916 | DNA helicase activity | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.225 | 0.916 | DNA helicase activity | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.222 | 0.916 | DNA helicase activity | a.4.1 | Homeodomain-like |
| View | Download | 0.201 | 0.916 | DNA helicase activity | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
|
Region A: Residues: [1312-1498] |
1 11 21 31 41 51
| | | | | |
1 TCIHGSANAS TNATTNSSTN ATTTASTNVR TSATTTASIN VRTSATTTES TNSSTNATTT 60
61 ASTNVRTSAT TTASINVRTS ATTTESTNSN TSATTTESTD SNTSATTTES TDSNTSATTT 120
121 ASTNSSTNAT TTASTNSSTN ATTTESTNAS AKEDANKDGN AEDNRFHPVT DINKESYKRK 180
181 GSQMVLL
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1dnnB_ |
| Description: | No description for 1dnnB_ was found. |
|
Region A: Residues: [1499-1859] |
1 11 21 31 41 51
| | | | | |
1 ERKKLKAQFP NTSENMNVLQ FLGFRSDEIK HLFLYGIDVY FCPEGVFTQY GLCKGCQKMF 60
61 ELCVCWAGQK VSYRRMAWEA LAVERMLRND EEYKEYLEDI EPYHGDPVGY LKFFSVKRGE 120
121 IYSQIQRNYA WYLAITRRRE TISVLDSTRG KQGSQVFRMS GRQIKELYYK VWSNLRESKT 180
181 EVLQYFLNWD EKKCREEWEA KDDTVFVEAL EKVGVFQRLR SMTSAGLQGP QYVKLQFSRH 240
241 HRQLRSRYEL SLGMHLRDQL ALGVTPSKVP HWTAFLSMLI GLFCNKTFRQ KLEYLLEQIS 300
301 EVWLLPHWLD LANVEVLAAD NTRVPLYMLM VAVHKELDSD DVPDGRFDIL LCRDSSREVG 360
361 E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.585 | a.5.2 | UBA-like |
| View | Download | 0.564 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.531 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.516 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.499 | d.45.1 | ClpS-like |
|
Region A: Residues: [1318-1526] |
1 11 21 31 41 51
| | | | | |
1 ANASTNATTN SSTNATTTAS TNVRTSATTT ASINVRTSAT TTESTNSSTN ATTTASTNVR 60
61 TSATTTASIN VRTSATTTES TNSNTSATTT ESTDSNTSAT TTESTDSNTS ATTTASTNSS 120
121 TNATTTASTN SSTNATTTES TNASAKEDAN KDGNAEDNRF HPVTDINKES YKRKGSQMVL 180
181 LERKKLKAQF PNTSENMNVL QFLGFRSDE
|
| Detection Method: | |
| Confidence: | 3.39794 |
| Match: | 1ezgA |
| Description: | Insect cysteine-rich antifreeze protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1527-1766] |
1 11 21 31 41 51
| | | | | |
1 IKHLFLYGID VYFCPEGVFT QYGLCKGCQK MFELCVCWAG QKVSYRRMAW EALAVERMLR 60
61 NDEEYKEYLE DIEPYHGDPV GYLKFFSVKR GEIYSQIQRN YAWYLAITRR RETISVLDST 120
121 RGKQGSQVFR MSGRQIKELY YKVWSNLRES KTEVLQYFLN WDEKKCREEW EAKDDTVFVE 180
181 ALEKVGVFQR LRSMTSAGLQ GPQYVKLQFS RHHRQLRSRY ELSLGMHLRD QLALGVTPSK 240
241
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1767-1859] |
1 11 21 31 41 51
| | | | | |
1 VPHWTAFLSM LIGLFCNKTF RQKLEYLLEQ ISEVWLLPHW LDLANVEVLA ADNTRVPLYM 60
61 LMVAVHKELD SDDVPDGRFD ILLCRDSSRE VGE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
