| Protein: | VNX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 908 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VNX1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..908] | [1..908] |
|
|
0.0 | [102..904] | [79..871] |
|
|
0.0 | [102..732] | [147..770] |
|
|
0.0 | [98..736] | [70..645] |
|
|
4.0E-93 | [450..908] | [18..438] |
|
|
2.0E-82 | [453..905] | [18..429] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MAKNNHISAS GNSTSGDHRL KEEVLTPTTS ASTPHRIFSV DDDPKEIQND IRYLEGLHEG 60
61 LKFALHANKS KRSVSSQSPI VHSSNNTLHH HEHQQHLPPT LESLSSKSHS VPDLNTATPS 120
121 SPKRMHSSIR ELPHDDNDDE DANDDSRFII HDSHGHDLLI DEINCQSPSH LENNDQAS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [179-326] |
1 11 21 31 41 51
| | | | | |
1 NASSTESFTL RERQDAINET HPFGIRIWKP ALYKKHRSVQ RTAAQDIHET QLKTITWEVT 60
61 CSNVLWFILF GFPIAILFYS AAIVVFLLGG GGLVTNSAKE YSKCLYKLAN YFLWPFGKMV 120
121 YLLQDEQYLQ EDKDEGISMQ QFYNWVTS
|
| Detection Method: | |
| Confidence: | 32.187087 |
| Match: | PF03733 |
| Description: | Domain of unknown function (DUF307) |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.546 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.313 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.286 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.256 | N/A | N/A | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.255 | N/A | N/A | a.118.8 | TPR-like |
|
Region A: Residues: [327-464] |
1 11 21 31 41 51
| | | | | |
1 YSNRLVFHQS QAKFQQREDH PAPATESSSL MPPANTTATP LNSNHPSYNS IRHEIPHAAA 60
61 QRRYFGRGKW SWGRVLFYTI FHLVLQPILA VLSLCLWLLV FTIPMSNVLW QIMYHCRRHP 120
121 LALGFKYVEN SSQSHENE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.387 | c.10.2 | L domain-like |
| View | Download | 0.387 | c.10.2 | L domain-like |
| View | Download | 0.236 | a.118.15 | Aconitase B, N-terminal domain |
| View | Download | 0.236 | a.118.15 | Aconitase B, N-terminal domain |
| View | Download | 0.206 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.206 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
|
Region A: Residues: [465-908] |
1 11 21 31 41 51
| | | | | |
1 ITQQQLNKNI LLCTFRAAGW HYYKYTVDGT NVIVVNLISI VFFTIFDFYV LKNFLHWKTW 60
61 FTYESSIFIL CLTSTIPLAF YIGQAVASIS AQTSMGVGAV INAFFSTIVE IFLYCVALQQ 120
121 KKGLLVEGSM IGSILGAVLL LPGLSMCGGA LNRKTQRYNP ASAGVSSALL IFSMIVMFVP 180
181 TVLYEIYGGY SVNCADGAND RDCTFSHPPL KFNRLFTHVI QPMSISCAIV LFCAYIIGLW 240
241 FTLRTHAKMI WQLPIADPTS TAPEQQEQNS HDAPNWSRSK STCILLMSTL LYAIIAEILV 300
301 SCVDAVLEDI PSLNPKFLGL TIFALIPNTT EFLNAISFAI HGNVALSMEI GSAYALQVCL 360
361 LQIPSLVIYS IFYTWNVKKS MINIRTQMFP LVFPRWDIFG AMTSVFMFTY LYAEGKSNYF 420
421 KGSMLILLYI IIVVGFYFQG ALSE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [720-908] |
1 11 21 31 41 51
| | | | | |
1 ADPTSTAPEQ QEQNSHDAPN WSRSKSTCIL LMSTLLYAII AEILVSCVDA VLEDIPSLNP 60
61 KFLGLTIFAL IPNTTEFLNA ISFAIHGNVA LSMEIGSAYA LQVCLLQIPS LVIYSIFYTW 120
121 NVKKSMINIR TQMFPLVFPR WDIFGAMTSV FMFTYLYAEG KSNYFKGSML ILLYIIIVVG 180
181 FYFQGALSE
|
| Detection Method: | |
| Confidence: | 20.769551 |
| Match: | PF01699.15 |
| Description: | No description for PF01699.15 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
