YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP11
Organism:	Saccharomyces cerevisiae
Length:	318 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP11.

Description	E-value	Query Range	Subject Range
gi\|2459910 - gi\|2459910\|gb\|AAB81487.1\| anon2A5 [Drosophila yakuba]	330.0	[0..6]	[317..5]
CG10340-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10340 (CG10340, FBgn0022344). It is a prote...	326.0	[0..6]	[317..5]
gi\|190689449, gi... - gi\|190690811\|gb\|ACE87180.1\| ATP synthase mitochondrial F1 complex assembly factor 1 protein [synthet... gi\|17511865, gi\|... - gi\|48735309\|gb\|AAH71731.1\| ATP synthase mitochondrial F1 complex assembly factor 1 [Homo sapiens], g...	318.0	[0..34]	[315..67]
gi\|109004053 - gi\|109004053\|ref\|XP_001108586.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	313.0	[0..34]	[315..67]
ATP11_SCHPO - Protein atp11, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp11 PE=3 SV... atp11 - F1-ATPase chaperone Atp11	307.0	[0..57]	[317..38]
gi\|73977856 - gi\|73977856\|ref\|XP_853001.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	304.0	[0..36]	[315..85]
gi\|149035625, gi... - ref\|XP_233402.2\| similar to ATP synthase mitochondrial F1 complex assembly factor 1 [Rattus norvegic...	298.0	[0..36]	[315..89]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRLTRKIGT RIHISNQLSP IFNKAIGTVP VFRFYSSSPE QKYRKKLLEE AQKQGFNSIE  60
   61 ELKNHLKETI ESKKREFNKI DPLKELE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYQQKTQMEN NNSKHLMTKS RSPLDPSAPK VPFKTLDSFL DVGKLKDLSK QEVEFLWRAR  60
   61 WAQKDNTLCA VIPVSVYDKM MANARNNPIF VLPLPRQVQS EDAKPNEEQG MELHYIQWQF 120
  121 VGPQTTHCMM TSLAEYKLHQ EFARPHTTLQ FHSDLVKDKG IVFMNGHVEP DTNVNVQDAQ 180
  181 LLLLNVQRFY GAMGEETPVA KQRVQLLRDF SKASPGFTVE KLISLSQSME N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits