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View Structure Prediction Details

Protein: YNL311C
Organism: Saccharomyces cerevisiae
Length: 763 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL311C.

Description E-value Query
Range
Subject
Range
gi|51012873 - gi|51012873|gb|AAT92730.1| YNL311C [Saccharomyces cerevisiae]
1559.0 [0..1] [763..1]
gi|49528833 - gi|49528833|emb|CAG62495.1| unnamed protein product [Candida glabrata]
gi|49528833, gi|... - gi|50294215|ref|XP_449519.1| hypothetical protein CAGL0M03971g [Candida glabrata CBS138], gi|4952883...
762.0 [0..1] [762..1]
gi|49643414, gi|... - gi|50308553|ref|XP_454279.1| unnamed protein product [Kluyveromyces lactis], gi|49643414|emb|CAG9936...
gi|49643414 - gi|49643414|emb|CAG99366.1| KLLA0E07327p [Kluyveromyces lactis]
542.0 [0..57] [761..36]
gi|44982460 - gi|44982460|gb|AAS51746.1| ADL174Cp [Ashbya gossypii ATCC 10895]
gi|45187699, gi|... - gi|45187699|ref|NP_983922.1| ADL174Cp [Ashbya gossypii ATCC 10895], gi|44982460|gb|AAS51746.1| ADL17...
359.0 [0..1] [760..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLQLFGRS KYFSLVSSAA KEEEEEEEGC ADAKSLLHST SHDIKSRSLR FNDKSSLMCL  60
   61 PTKVLLLILR TLDFNTLVTL CQVNSRFYNL ITNEFLFQNV ILDSKLSLLK FNALIHSEFH 120
  121 TSNIVTHS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.585027
Match: PF00646
Description: F-box domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-763]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDCSTQSRSQ NARFLVRSIE FKNPQSQDSL LKYSKFYNKS GQDSIIAGSY KLDSYDKDVK  60
   61 KLNNIRLNDE TPIITSERIK LLDKLESNYF HYTYIELMLD IIDYLPNLTR VILSDVEPNF 120
  121 KIPLWYSVFN DGSRDFFKKI IKGQQSITNE DLRTFQLSKK FVKEYESKYY SLPRLKILEI 180
  181 KANNKRQRTF NRQRHHQKLV LRPSLFCCFG IINELKLENV TIDTESLDTP MEFLPLFLKN 240
  241 EDNELYSLQS PITALTLDSC DVVPGNGILR LFHSYFKMVK HLSLLKINSK FDLLLCSCFP 300
  301 SLSNLTIDCN SKCFTNEQVV GESYYFQQRS LDTEDDFDDC NSMTETLFEA PSDSKIITPP 360
  361 PTSSVVLSLN LNYISRTTGN DVSNNPSPDN NKKPAMLTAA QLQNFQRQRI PEFHSFYHYY 420
  421 RLLWERLPSK NISINVINIP FTNVYPLSPL SFWEHLARTI TSVDETDEDV GDENDQETLI 480
  481 GYENNSIRDN IPNANAVPNL STVMSPESDI HHTYYWNNSV RRCLRDSLIK LKNRTIEYRD 540
  541 LDVEEFLQNV TLENFFNDFQ DPENFKDIPN INLWCFLRNL SKFKAVKIRM LRHFSLCTPR 600
  601 TRYDWELLLK PVLRVNVPIE VRDKDGFVLY SYGQK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle