YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS18
Organism:	Saccharomyces cerevisiae
Length:	217 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS18.

Description	E-value	Query Range	Subject Range
RT18_YEAST - 37S ribosomal protein S18, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... MRPS18 - Mitochondrial ribosomal protein of the small subunit; essential for viability, unlike most other mit...	8.0E-69	[1..217]	[1..217]
RS11_OCHA4 - 30S ribosomal protein S11 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rp... RS11_BRUO2 - 30S ribosomal protein S11 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsK PE=3 SV... RS11_BRUA2 - 30S ribosomal protein S11 OS=Brucella abortus (strain 2308) GN=rpsK PE=3 SV=1 RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsK PE=3 SV=1 RS11_BRUAB - 30S ribosomal protein S11 OS=Brucella abortus GN=rpsK PE=3 SV=1 gi\|225627681, gi... - gi\|225627681\|ref\|ZP_03785718.1\| 30S ribosomal protein S11 [Brucella ceti str. Cudo], gi\|225617686\|gb... gi\|239824366, gi... - gi\|239832099\|ref\|ZP_04680428.1\| 30S ribosomal protein S11 [Ochrobactrum intermedium LMG 3301], gi\|23... gi\|254689430 - gi\|254689430\|ref\|ZP_05152684.1\| 30S ribosomal protein S11 [Brucella abortus bv. 6 str. 870] RS11_BRUMB - 30S ribosomal protein S11 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpsK PE=3 SV=1 gi\|237788927, gi... - gi\|237815629\|ref\|ZP_04594626.1\| 30S ribosomal protein S11 [Brucella abortus str. 2308 A], gi\|2377889... gi\|254701951 - gi\|254701951\|ref\|ZP_05163779.1\| 30S ribosomal protein S11 [Brucella suis bv. 5 str. 513] gi\|254704495 - gi\|254704495\|ref\|ZP_05166323.1\| 30S ribosomal protein S11 [Brucella suis bv. 3 str. 686] gi\|254693915 - gi\|254693915\|ref\|ZP_05155743.1\| 30S ribosomal protein S11 [Brucella abortus bv. 3 str. Tulya] gi\|254697565 - gi\|254697565\|ref\|ZP_05159393.1\| 30S ribosomal protein S11 [Brucella abortus bv. 2 str. 86/8/59] RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis GN=rpsK PE=3 SV=1 gi\|254714278 - gi\|254714278\|ref\|ZP_05176089.1\| 30S ribosomal protein S11 [Brucella ceti M644/93/1] gi\|254717715 - gi\|254717715\|ref\|ZP_05179526.1\| 30S ribosomal protein S11 [Brucella ceti M13/05/1] RS11_BRUSU - 30S ribosomal protein S11 OS=Brucella suis biovar 1 (strain 1330) GN=rpsK PE=3 SV=1 gi\|254706609 - gi\|254706609\|ref\|ZP_05168437.1\| 30S ribosomal protein S11 [Brucella pinnipedialis M163/99/10] RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254710281 - gi\|254710281\|ref\|ZP_05172092.1\| 30S ribosomal protein S11 [Brucella pinnipedialis B2/94] gi\|254719268 - gi\|254719268\|ref\|ZP_05181079.1\| 30S ribosomal protein S11 [Brucella sp. 83/13] RS11_BRUME - 30S ribosomal protein S11 OS=Brucella melitensis GN=rpsK PE=3 SV=1 RS11_BRUA1 - 30S ribosomal protein S11 OS=Brucella abortus (strain S19) GN=rpsK PE=3 SV=1 gi\|254730459 - gi\|254730459\|ref\|ZP_05189037.1\| 30S ribosomal protein S11 [Brucella abortus bv. 4 str. 292] RS11_BRUSI - 30S ribosomal protein S11 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpsK PE=3 SV=1 RS11_BRUC2 - 30S ribosomal protein S11 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsK PE=3 SV=1	1.0E-42	[83..217]	[2..129]
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1 RS11_CAUCN - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1 RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsK PE=3 SV=1	1.0E-42	[83..217]	[2..129]
RS11_SINMW - 30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1 RS11_RHISN - 30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1 RS11_RHIME - 30S ribosomal protein S11 OS=Rhizobium meliloti (strain 1021) GN=rpsK PE=3 SV=1	6.0E-42	[83..217]	[2..129]
RS11_PASMU - 30S ribosomal protein S11 OS=Pasteurella multocida GN=rpsK PE=3 SV=1 RS11_HISS2 - 30S ribosomal protein S11 OS=Histophilus somni (strain 2336) GN=rpsK PE=3 SV=1 RS11_PASMU - 30S ribosomal protein S11 OS=Pasteurella multocida (strain Pm70) GN=rpsK PE=3 SV=1 tr\|J6CNC5\|J6CNC5... - 30S ribosomal protein S11 OS=Pasteurella multocida subsp. multocida str. Anand1_cattle GN=rpsK PE=3 ... gi\|247535248, gi... - gi\|251793849\|ref\|YP_003008581.1\| ribosomal protein S11 [Aggregatibacter aphrophilus NJ8700], gi\|2475...	6.0E-41	[83..217]	[2..129]
gi\|229369536, gi... - gi\|229606881\|ref\|YP_002877529.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae MJ-1236], gi\|229... gi\|229335129, gi... - gi\|229527497\|ref\|ZP_04416889.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae 12129(1)], gi\|229... gi\|229524554, gi... - gi\|229524554\|ref\|ZP_04413959.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae bv. albensis VL42... gi\|229341233, gi... - gi\|229521639\|ref\|ZP_04411057.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae TM 11079-80], gi\|... gi\|229516826, gi... - gi\|229516826\|ref\|ZP_04406272.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae RC9], gi\|22934588... gi\|229349373, gi... - gi\|229513496\|ref\|ZP_04402960.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae TMA 21], gi\|22934... RS11_VIBCB - 30S ribosomal protein S11 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpsK PE=3 SV=1 gi\|229353175, gi... - gi\|229509701\|ref\|ZP_04399182.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae B33], gi\|22935317... gi\|197750417, gi... - gi\|254292240\|ref\|ZP_04963003.1\| ribosomal protein S11 [Vibrio cholerae AM-19226], gi\|197750417\|ref\|Y... gi\|229507375, gi... - gi\|229507375\|ref\|ZP_04396880.1\| SSU ribosomal protein S11p (S14e) [Vibrio cholerae BX 330286], gi\|22... RS11_VIBCM - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpsK PE=3 SV=1 gi\|116187571, gi... - gi\|75828520\|ref\|ZP_00757915.1\| COG0100: Ribosomal protein S11 [Vibrio cholerae MO10], gi\|254851113\|r... RS11_VIBC3 - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / ... RS11_VIBCH - 30S ribosomal protein S11 OS=Vibrio cholerae GN=rpsK PE=3 SV=1 RS11_VIBPA - 30S ribosomal protein S11 OS=Vibrio parahaemolyticus GN=rpsK PE=3 SV=1 RS11_VIBVU - 30S ribosomal protein S11 OS=Vibrio vulnificus GN=rpsK PE=3 SV=1 gi\|149737817, gi... - gi\|153827708\|ref\|ZP_01980375.1\| ribosomal protein S11 [Vibrio cholerae MZO-2], gi\|149737817\|gb\|EDM52... gi\|153840231, gi... - gi\|153840231\|ref\|ZP_01992898.1\| ribosomal protein S11 [Vibrio parahaemolyticus AQ3810], gi\|149746108... gi\|254509450, gi... - gi\|254509450\|ref\|ZP_05121528.1\| ribosomal protein S11 [Vibrio parahaemolyticus 16], gi\|225098212\|ref... gi\|149192392, gi... - gi\|149192392\|ref\|ZP_01870593.1\| 30S ribosomal protein S11 [Vibrio shilonii AK1], gi\|148833783\|gb\|EDL... RS11_VIBVU - 30S ribosomal protein S11 OS=Vibrio vulnificus (strain CMCP6) GN=rpsK PE=3 SV=1 RS11_VIBVY - 30S ribosomal protein S11 OS=Vibrio vulnificus (strain YJ016) GN=rpsK PE=3 SV=1 RS11_VIBPA - 30S ribosomal protein S11 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpsK PE... RS11_VIBCH - 30S ribosomal protein S11 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) G... gi\|124113314, gi... - gi\|153217777\|ref\|ZP_01951420.1\| ribosomal protein S11 [Vibrio cholerae 1587], gi\|124113314\|gb\|EAY321...	1.0E-40	[83..217]	[2..129]
gi\|213999761 - gi\|213999761\|ref\|ZP_03410496.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|213580696 - gi\|213580696\|ref\|ZP_03362522.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... RS11_SALTI - 30S ribosomal protein S11 OS=Salmonella typhi GN=rpsK PE=3 SV=1 gi\|213612394 - gi\|213612394\|ref\|ZP_03370220.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|213647331 - gi\|213647331\|ref\|ZP_03377384.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|213856916 - gi\|213856916\|ref\|ZP_03384156.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... RS11_SALTI - 30S ribosomal protein S11 OS=Salmonella typhi GN=rpsK PE=3 SV=1 gi\|29139991, gi\|... - gi\|29144353\|ref\|NP_807695.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serovar ... gi\|213052885 - gi\|213052885\|ref\|ZP_03345763.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|213419636 - gi\|213419636\|ref\|ZP_03352702.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|213425774 - gi\|213425774\|ref\|ZP_03358524.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... gi\|16762866 - gi\|16762866\|ref\|NP_458483.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serovar ...	1.0E-40	[83..217]	[2..129]
gi\|87162098\|ref\|... - 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus USA300], 30S ribosomal protein S11 [S... RS11_STAAC - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain COL) GN=rpsK PE=3 SV=1 RS11_STAHJ - 30S ribosomal protein S11 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsK PE=3 SV=1 RS11_STAA3 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300) GN=rpsK PE=3 SV=1 RS11_STAAB - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsK PE=3 SV=1 RS11_STAAT - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpsK PE=3 SV=1 RS11_STAAW - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MW2) GN=rpsK PE=3 SV=1 RS11_STAA2 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH1) GN=rpsK PE=3 SV=1 RS11_STAA9 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain JH9) GN=rpsK PE=3 SV=1 gi\|269203858\|ref... - 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus ED98] gi\|221140173 - gi\|221140173\|ref\|ZP_03564666.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ... gi\|221138927 - gi\|221138927\|ref\|ZP_03563728.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ... gi\|227246802, gi... - gi\|227556944\|ref\|ZP_03986991.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus MN8],... RS11_STAA1 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rpsK PE=3 SV=1 gi\|222444269, gi... - gi\|223042606\|ref\|ZP_03612655.1\| 30S ribosomal protein S11 [Staphylococcus capitis SK14], gi\|22244426... gi\|227852757, gi... - gi\|227899004\|ref\|ZP_04016809.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH60... RS11_STAAE - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Newman) GN=rpsK PE=3 SV=1 gi\|228474577, gi... - gi\|228474577\|ref\|ZP_04059308.1\| 30S ribosomal protein S11 [Staphylococcus hominis SK119], gi\|2282712... gi\|242350379, gi... - gi\|242371872\|ref\|ZP_04817446.1\| 30S ribosomal protein S11 [Staphylococcus epidermidis M23864:W1], gi... gi\|251813348, gi... - gi\|251813348\|ref\|ZP_04827821.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH70... gi\|253316986 - gi\|253316986\|ref\|ZP_04840199.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus str. ... gi\|253729891, gi... - gi\|253729891\|ref\|ZP_04864056.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus USA30... gi\|253727683, gi... - gi\|253734366\|ref\|ZP_04868531.1\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus TCH13... gi\|255007005 - gi\|255007005\|ref\|ZP_05145606.2\| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus Mu50-... RS11_STAAM - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsK PE=3 SV=1 RS11_STAAN - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain N315) GN=rpsK PE=1 SV=1 RS11_STAA8 - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain NCTC 8325) GN=rpsK PE=3 SV=1 RS11_STAAS - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MSSA476) GN=rpsK PE=3 SV=1 gi\|25294668 - pir\|\|D90019 30S ribosomal protein S11 [imported] - Staphylococcus aureus (strain N315) RS11_STAAR - 30S ribosomal protein S11 OS=Staphylococcus aureus (strain MRSA252) GN=rpsK PE=3 SV=1	2.0E-40	[83..217]	[2..129]
RS11_SALPB - 30S ribosomal protein S11 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsK PE=3 SV=1 RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis GN=rpsK PE=3 SV=1 RS11_SALPB - 30S ribosomal protein S11 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsK PE=3 SV=1 lcl\|NC_016856.1_... - [gene=rpsK] [protein=30S ribosomal protein S11] [protein_id=YP_005239607.1] [location=complement(359... gi\|168264702, gi... - gi\|205346874\|gb\|EDZ33505.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar Hadar... RS11_SALPA - 30S ribosomal protein S11 OS=Salmonella paratyphi A GN=rpsK PE=3 SV=1 RS11_SALPA - 30S ribosomal protein S11 OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=rpsK PE=3 SV=1 gi\|238913868 - gi\|238913868\|ref\|ZP_04657705.1\| 30S ribosomal protein S11 [Salmonella enterica subsp. enterica serov... RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis (strain SC-B67) GN=rpsK PE=3 SV=1 gi\|199605958, gi... - gi\|200388860\|ref\|ZP_03215472.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar V... gi\|204931410, gi... - gi\|204931410\|ref\|ZP_03222079.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar J... RS11_SALG2 - 30S ribosomal protein S11 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rpsK PE=3 SV=1 RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium GN=rpsK PE=3 SV=2 RS11_SALPC - 30S ribosomal protein S11 OS=Salmonella paratyphi C (strain RKS4594) GN=rpsK PE=3 SV=1 RS11_SALCH - 30S ribosomal protein S11 OS=Salmonella choleraesuis GN=rpsK PE=3 SV=1 RS11_SALSV - 30S ribosomal protein S11 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsK PE=3 SV=1 RS11_SALA4 - 30S ribosomal protein S11 OS=Salmonella agona (strain SL483) GN=rpsK PE=3 SV=1 gi\|197261685, gi... - gi\|197261685\|ref\|ZP_03161759.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar S... RS11_SALDC - 30S ribosomal protein S11 OS=Salmonella dublin (strain CT_02021853) GN=rpsK PE=3 SV=1 RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rpsK PE... gi\|195628907, gi... - gi\|195628907\|gb\|EDX48317.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar Newpo... RS11_SALNS - 30S ribosomal protein S11 OS=Salmonella newport (strain SL254) GN=rpsK PE=3 SV=1 RS11_SALHS - 30S ribosomal protein S11 OS=Salmonella heidelberg (strain SL476) GN=rpsK PE=3 SV=1 gi\|194472213, gi... - gi\|194472213\|ref\|ZP_03078197.1\| ribosomal protein S11 [Salmonella enterica subsp. enterica serovar K... RS11_SALTY - 30S ribosomal protein S11 OS=Salmonella typhimurium GN=rpsK PE=3 SV=2	2.0E-40	[83..217]	[2..129]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQPVWKGC RWTQFVRPIR RWNSTGTNRG VPFSFKDISN QEDITNISYP SSSDSVLTKS  60
   61 NGSSEVYKPK EEVVKYILHG KFTKNNTHLT FSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVEDKNFHKN KGLTYNDTML YYLNLPQKVK ISLSTGCLGF RKAARGEYEA AFQTSGRMFE  60
   61 LIKEKNMLNK DIEVVMDDFG KGRAAFISAL VGKEGASVVK KVVKISDATK LKFGGVRSPK 120
  121 MRRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1l1uK_
Description:	No description for 1l1uK_ was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.83351366956976	bayes_pls_golite062009
structural molecule activity	9.25292687983044	bayes_pls_golite062009
RNA binding	1.52264031918826	bayes_pls_golite062009
binding	1.00308223323532	bayes_pls_golite062009
nucleic acid binding	0.983215686081669	bayes_pls_golite062009
protein binding	0.452073733364249	bayes_pls_golite062009
rRNA binding	0.357032493028	bayes_pls_golite062009
catalytic activity	0.249767694451989	bayes_pls_golite062009
translation regulator activity	0.17520676474539	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: