YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL305C
Organism:	Saccharomyces cerevisiae
Length:	297 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL305C.

Description	E-value	Query Range	Subject Range
gi\|151944244 - gi\|151944244\|gb\|EDN62523.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207341974 - gi\|207341974\|gb\|EDZ69882.1\| YNL305Cp-like protein [Saccharomyces cerevisiae AWRI1631] YNL305C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|190409269 - gi\|190409269\|gb\|EDV12534.1\| hypothetical protein SCRG_03429 [Saccharomyces cerevisiae RM11-1a] BXI1_YEAST - Bax inhibitor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BXI1 PE=1 SV=1	3.0E-62	[1..297]	[1..297]
gi\|4589544 - gi\|4589544\|dbj\|BAA76794.1\| KIAA0950 protein [Homo sapiens]	4.0E-57	[5..295]	[83..343]
LFG2_RAT - Protein lifeguard 2 OS=Rattus norvegicus GN=Faim2 PE=2 SV=1	4.0E-53	[5..295]	[56..316]
gi\|12850853, gi\|... - gi\|84781820\|ref\|NP_001033747.1\| lifeguard isoform 2 [Mus musculus], gi\|26326511\|dbj\|BAC26999.1\| unna...	4.0E-51	[5..295]	[57..305]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-49	[3..295]	[92..345]
gi\|23463297, gi\|... - gi\|94400811\|ref\|NP_695220.3\| glutamate receptor, ionotropic, N-methyl D-asparate-associated protein ... gi\|8248741 - gi\|8248741\|gb\|AAB20211.2\| NMDA receptor glutamate-binding subunit [Rattus sp.]	3.0E-49	[3..295]	[92..345]
Nmda1-PD, Nmda1-... - The gene N-methyl-D-aspartate receptor-associated protein is referred to in FlyBase by the symbol Dm... gi\|220950614, gi... - gi\|220959330\|gb\|ACL92208.1\| Nmda1-PC [synthetic construct], gi\|220950614\|gb\|ACL87850.1\| Nmda1-PC [sy...	6.0E-47	[3..295]	[67..324]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPPPPYEE QSSHLYGQPA SSQDGNAFIP EDFKYSTVVI SCEPIIRQRF MHKVYSLLSC  60
   61 QLLASLSFCY WASVSTSLQN FIMSHIALFY ICMVVSLVSC IWLAVSPRPE DYEASVPEPL 120
  121 LTGSSEEPAQ EQRRLPWYVL SSYKQKLTLL SIFTLSEAYC LSLVTLAYDK DTVLSALLIT 180
  181 TIVVVGVSLT ALSERFENVL NSATSIYYWL NWGLWIMIGM GLTALLFGWN THSSKFNLLY 240
  241 GWLGAILFTA YLFIDTQLIF RKVYPDEEVR CAMMLYLDIV NLFLSILRIL ANSNDDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.468521
Match:	PF01027
Description:	Uncharacterised protein family UPF0005

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLVSCIWLAV SPRPEDYEAS VPEPLLTGSS EEPAQEQRRL PWYVLSSYKQ KLTLLSIFTL  60
   61 SEAYCLSLVT LAYDKDTVLS ALLITTIVVV GVSLTALSER FENVLNSATS IYYWLNWGLW 120
  121 IMIGMGLTAL LFGWNTHSSK FNLLYGWLGA ILFTAYLFID TQLIFRKVYP DEEVRCAMML 180
  181 YLDIVNLFLS ILRILANSND DN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits