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View Structure Prediction Details

Protein: RPL18A, RPL18B
Organism: Saccharomyces cerevisiae
Length: 186 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL18A, RPL18B.

Description E-value Query
Range		 Subject
Range
RPL18 - ribosomal protein L18
RL18_MACFA - 60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1
gi|109125415 - gi|109125415|ref|XP_001114009.1| PREDICTED: similar to ribosomal protein L18 [Macaca mulatta]
gi|123981096, gi... - gi|208967314|dbj|BAG73671.1| ribosomal protein L18 [synthetic construct], gi|123995909|gb|ABM85556.1...
gi|55649555 - gi|55649555|ref|XP_512797.1| PREDICTED: similar to ribosomal protein L18; 60S ribosomal protein L18 ...
CCDS12726.1_1 - null
 1.0E-70 [1..185] [1..187]
RL18_RAT - 60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=1 SV=2
 9.0E-69 [1..185] [1..187]
gi|65068 - gi|65068|emb|CAA28689.1| ribosomal protein L14 [Xenopus laevis]
 4.0E-68 [1..185] [1..187]
RL18_ICTPU - 60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3
 4.0E-68 [1..185] [1..187]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 1.0E-67 [1..185] [1..187]
FBpp0305562, FBp... - The gene Ribosomal protein L18 is referred to in FlyBase by the symbol Dmel\RpL18 (CG8615, FBgn00357...
gi|220958312, gi... - gi|220958312|gb|ACL91699.1| RpL18-PA [synthetic construct], gi|220949142|gb|ACL87114.1| RpL18-PA [sy...
 4.0E-67 [1..185] [1..187]
RL18_OREMO - 60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2
RL18_ORENI - 60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2
 4.0E-67 [1..185] [1..187]

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Predicted Domain #1
Region A:
Residues: [1-186] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDHTSKQH KRSGHRTAPK SDNVYLKLLV KLYTFLARRT DAPFNKVVLK ALFLSKINRP  60
   61 PVSVSRIARA LKQEGAANKT VVVVGTVTDD ARIFEFPKTT VAALRFTAGA RAKIVKAGGE 120
  121 CITLDQLAVR APKGQNTLIL RGPRNSREAV RHFGMGPHKG KAPRILSTGR KFERARGRRR 180
  181 SKGFKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 536.124002
Match: 1k5yO_
Description: No description for 1k5yO_ was found.

Predicted Domain #2
Region A:
Residues: [144-186] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNSREAVRHF GMGPHKGKAP RILSTGRKFE RARGRRRSKG FKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle