| Protein: | RIM21 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 533 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM21.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..533] | [1..533] |
|
|
0.0 | [71..360] | [93..377] |
|
|
0.0 | [85..357] | [77..378] |
|
|
0.006 | [202..311] | [306..415] |
|
Region A: Residues: [1-64] |
1 11 21 31 41 51
| | | | | |
1 MNLWRHSPEE LAAYNSCHPM KLGSGVLIQL PLYDNSAVYA EDITFRSFCC ERVPVYVSTV 60
61 LRNS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.389 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.462 | d.10.1 | DNA-binding domain |
| View | Download | 0.379 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.399 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.363 | a.2.7 | tRNA-binding arm |
| View | Download | 0.361 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.333 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.328 | d.58.17 | Metal-binding domain |
| View | Download | 0.304 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.303 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.300 | d.58.17 | Metal-binding domain |
| View | Download | 0.300 | a.2.3 | Chaperone J-domain |
| View | Download | 0.300 | g.8.1 | BPTI-like |
| View | Download | 0.289 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.286 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.283 | d.93.1 | SH2 domain |
| View | Download | 0.278 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.272 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.267 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.267 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.248 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.247 | g.37.1 | C2H2 and C2HC zinc fingers |
| View | Download | 0.246 | a.5.2 | UBA-like |
| View | Download | 0.242 | a.4.1 | Homeodomain-like |
| View | Download | 0.238 | a.64.1 | Saposin |
| View | Download | 0.230 | g.23.1 | TB module/8-cys domain |
| View | Download | 0.224 | b.72.2 | Carbohydrate binding domain |
| View | Download | 0.218 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.205 | a.35.1 | lambda repressor-like DNA-binding domains |
|
Region A: Residues: [65-376] |
1 11 21 31 41 51
| | | | | |
1 SPYRYLDEVI NDWQKFIQVS DYVGGSAEYA IYAVILSITS NFVITVFLTV ICCINISGRA 60
61 YKRILQLLRI ASLLASLNLT IFITKVLRRL EKEHNVYGVV RAHSIMHIFS DDMTFVVLDF 120
121 LATLMFQFCQ VGIVIRLFQR AQEKRIIFFI GVILTITANI LWVIPPFANH TTKHRNDWQI 180
181 LRPFVYLFRI AIATSYASIV IYHIWQKKKL WFKFNQMGLL TLLTILVVLL LPGFFLADVS 240
241 NLWISELGEV FNTTCYVTST VITWEWLDRL NVLERKEEAQ SILGRPIFEE EQQDYRFAKY 300
301 ALRVQNALTR RE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [377-533] |
1 11 21 31 41 51
| | | | | |
1 SQDASTDRHD TSSNSEVCDL QTISRYDPED QISVGRSIDR MHFNDRGTYK DVALKKLGYA 60
61 RDKILYFTDQ IVQKSVGHNN SSSSKNEKTK QRKAMVRKRL GLDKPGIYIY STKDVVFNSD 120
121 EDDDENAEDE DDDEYEVGSE GNNNSSATFT SDHIGHI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
