YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YNL284C-A
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL284C-A.

Description E-value Query
Range
Subject
Range
YNL284C-B - Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...
YN11B_YEAST - Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
592.0 [0..1] [435..1]

Back

Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQTAQSHSP QNGPYQQQCM MTQNQANPSG WSFYGRPSMI PYTPYQMSPM 120
  121 YFPPGPHSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 66.161151
Match: PF01021.10
Description: No description for PF01021.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [177-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNDFLNWVK TYIKFLQNSN LGDIIPTATR KAVRQMTDDE LTFLCHTFQL FAPSQFLPTW  60
   61 VKDILSADYT DIMKILSKSI NKMQSDTQEV NDITTLATLH YNGSTPADAF EAEVTNILDR 120
  121 LNNNGIPINN KVACQFIMRG LSGEYKFLRY AR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [329-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRYIHMTVAD LFSDIHSMYE EQQESKRNKS TYRRNPSDEK KDSRTYTNTT KPKSITRNSQ  60
   61 KPNNSQSRTA RAHNVSTSNN SSGPDNDLIR GSTTEPIQLK NKHDLHLRPG TY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle