YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL10
Organism:	Saccharomyces cerevisiae
Length:	322 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL10.

Description	E-value	Query Range	Subject Range
gi\|50305559, gi\|... - gi\|50305559\|ref\|XP_452739.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641872\|emb\|CAH0159... gi\|49641872 - gi\|49641872\|emb\|CAH01590.1\| KLLA0C12133p [Kluyveromyces lactis]	253.0	[0..56]	[314..50]
gi\|49526693 - gi\|49526693\|emb\|CAG60320.1\| unnamed protein product [Candida glabrata] gi\|49526693, gi\|... - gi\|50289903\|ref\|XP_447383.1\| hypothetical protein CAGL0I03036g [Candida glabrata CBS138], gi\|4952669...	236.0	[0..56]	[318..18]
gi\|45190529, gi\|... - gi\|45190529\|ref\|NP_984783.1\| AEL078Cp [Ashbya gossypii ATCC 10895], gi\|44983471\|gb\|AAS52607.1\| AEL07... gi\|44983471 - gi\|44983471\|gb\|AAS52607.1\| AEL078Cp [Ashbya gossypii ATCC 10895]	236.0	[0..41]	[322..12]
gi\|17861822 - gi\|17861822\|gb\|AAL39388.1\| GM01846p [Drosophila melanogaster]	233.0	[0..61]	[278..23]
gi\|73999382 - gi\|73999382\|ref\|XP_535072.2\| PREDICTED: similar to mitochondrial ribosomal protein L15 [Canis famili...	227.0	[0..61]	[315..24]
RM15_MOUSE - 39S ribosomal protein L15, mitochondrial OS=Mus musculus GN=Mrpl15 PE=1 SV=1	224.0	[0..61]	[315..23]
RM15_BOVIN - 39S ribosomal protein L15, mitochondrial OS=Bos taurus GN=MRPL15 PE=1 SV=1	223.0	[0..61]	[315..25]
gi\|22136330, gi\|... - gi\|22136330\|gb\|AAM91243.1\| unknown protein [Arabidopsis thaliana], gi\|21553371\|gb\|AAM62464.1\| unknow...	223.0	[0..47]	[246..50]

Back

Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAERQTGLR NSFTTVIGRK LINTFVPSMM LTSVAGNDIF FRGLFKSPVL AFQSYRYVSI  60
   61 LGQLKPSDGS TKSFKRLGRG PSSGLGKTSG RGQKGQKARG KVKSWFEGGQ TPIYKLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1nkwJ
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [118-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKIGFTNVGA KPLKELNLKR IQWFHDKNRL HLQPGEVLDM NKMRKLGLVT GPIKYGVKIL  60
   61 ASGKFHYNLP IALEASRASA KAIAAIEKAG GKFTARYYTP LGLRAHLNPQ WFLEKRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1nkwJ
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [235-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVPLQARPTK RRDIDFYSKE EKRGYLVMEK DKLLQDIKEA QNKGSRHFLK QNVKKSSLEI  60
   61 ELEELSPEKD WVPVVSNSKV MNIKALDH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits