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View Structure Prediction Details

Protein: BOR1
Organism: Saccharomyces cerevisiae
Length: 576 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BOR1.

Description E-value Query
Range
Subject
Range
gi|45384448, gi|... - gi|45384448|ref|NP_990294.1| solute carrier family 4, anion exchanger, member 2 (erythrocyte membran...
0.0 [15..553] [627..1200]
gi|3882199 - gi|3882199|dbj|BAA34459.1| KIAA0739 protein [Homo sapiens]
0.0 [6..548] [489..1091]
gi|15809042, gi|... - gi|15809042|ref|NP_291030.1| solute carrier family 4, sodium bicarbonate cotransporter-like, member ...
0.0 [6..560] [404..1017]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNESTRVTV SRGCTASDEC AQALERTNDE LDRESSVSES RSDEESHEKL SRRRFPTLGI  60
   61 GIWLDLKDRI PYYKSDWVDA FNYRVIPSIV DTYFNNLLPA IAFAQDMFDR TDNSYGVNEV 120
  121 LLSSAMAGIV FGVLGGQPLC IVGVTGPISI FNYTVYEIIK PLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.0
Match: 1bzkA_
Description: Band 3
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [164-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSYFGFMFWI CMWSMIFHLV LAFTNAVCLL QYVTTFPCDI FGLFINVVYI QKGIQILTRQ  60
   61 FSAKSGEKSV QDGFASVVVA LVMTAFGLFF KLFHYYPLFS HRIRTFISDY STALSVLFWS 120
  121 SFTHFGGYLH DVKFKKLPIT KAFFPTSKVN RPQNTWLAYE PIPVKDVFIA LPFGIFLTIL 180
  181 FYFDHNVSSL MAQRHQYKLK KPSSFHYDFA LLGLTTCISG VLGIPAPNGL IPQAPLHTET 240
  241 LLVRDSNQKV ISCVEQRFTN TFQGLMILGT MTRPLLVCLG EIPQAVLSGL FFIMGINGLM 300
  301 TNSIIQRLVF LFSDPNRRDN TSPLMKVSKK SMLIFLSFSL TGFAGEFAIT NTIAAIGFPL 360
  361 VLLLSVLVSF SFAYIFPTEE LKILDTNVAQ KFTIKNLLLE NIRDAKFCDK HED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [226-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKSGEKSVQD GFASVVVALV MTAFGLFFKL FHYYPLFSHR IRTFISDYST ALSVLFWSSF  60
   61 THFGGYLHDV KFKKLPITKA FFPTSKVNRP QNTWLAYEPI PVKDVFIALP FGIFLTILFY 120
  121 FDHNVSSLMA QRHQYKLKKP SSFHYDFALL GLTTCISGVL GIPAPNGLIP QAPLHTETLL 180
  181 VR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [408-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSNQKVISCV EQRFTNTFQG LMILGTMTRP LLVCLGEIPQ AVLSGLFFIM GINGLMTNSI  60
   61 IQRLVFLFSD PNRRDNTSPL MKVSKKSMLI FLSFSLTGFA GEFAITNTIA AIGFPLVLLL 120
  121 SVLVSFSFAY IFPTEELKIL DTNVAQKFTI KNLLLENIRD AKFCDKHED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle