| Protein: | LYP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 611 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..611] | [1..611] |
|
|
0.0 | [21..604] | [5..594] |
|
|
0.0 | [70..610] | [33..578] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MGRFSNIITS NKWDEKQNNI GEQSMQELPE DQIEHEMEAI DPSNKTTPYS IDEKQYNTKK 60
61 KHGSLQGGAI ADVNSITNSL TRLQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.306 | a.11.2 | Second domain of FERM |
| View | Download | 0.375 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.313 | a.118.8 | TPR-like |
| View | Download | 0.258 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.261 | a.11.1 | Acyl-CoA binding protein |
| View | Download | 0.222 | c.10.1 | RNI-like |
| View | Download | 0.215 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.214 | a.101.1 | Uteroglobin-like |
| View | Download | 0.203 | a.112.1 | Description not found. |
|
Region A: Residues: [85-611] |
1 11 21 31 41 51
| | | | | |
1 VVSHETDINE DEEEAHYEDK HVKRALKQRH IGMIALGGTI GTGLFVGIST PLSNAGPVGS 60
61 LIAYIFMGTI VYFVTQSLGE MATFIPVTSS ITVFSKRFLS PAFGVSNGYM YWFNWAITYA 120
121 VEVSVIGQVI EYWTDKVPLA AWIAIFWVII TLMNFFPVKV YGEFEFWVAS VKVLAIMGYL 180
181 IYALIIVCGG SHQGPIGFRY WRNPGAWGPG IISSDKSEGR FLGWVSSLIN AAFTYQGTEL 240
241 VGITAGEAAN PRKTVPRAIN KVVFRIVLFY IMSLFFIGLL VPYNDSRLSA SSAVIASSPF 300
301 VISIQNAGTY ALPDIFNAVV LITVVSAANS NVYVGSRVLY SLARTGNAPK QFGYVTRQGV 360
361 PYLGVVCTAA LGLLAFLVVN NNANTAFNWL INISTLAGLC AWLFISLAHI RFMQALKHRG 420
421 ISRDDLPFKA KLMPYGAYYA AFFVTVIIFI QGFQAFCPFK VSEFFTSYIS LILLAVVFIG 480
481 CQIYYKCRFI WKLEDIDIDS DRREIEAIIW EDDEPKNLWE KFWAAVA
|
| Detection Method: | |
| Confidence: | 224.744727 |
| Match: | PF00324 |
| Description: | Amino acid permease |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
