YRC Public Data Repository - Protein Structure Prediction

Protein:	YIF1
Organism:	Saccharomyces cerevisiae
Length:	314 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIF1.

Description	E-value	Query Range	Subject Range
YIF1 - Integral membrane protein required for the fusion of ER-derived COPII transport vesicles with the Go... YIF1_YEAST - Protein transport protein YIF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIF1 PE=1... gi\|207341914 - gi\|207341914\|gb\|EDZ69845.1\| YNL263Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151944284 - gi\|151944284\|gb\|EDN62562.1\| YIP1-interacting factor [Saccharomyces cerevisiae YJM789]	2.0E-89	[1..314]	[1..314]
gi\|14043299 - gi\|14043299\|gb\|AAH07644.1\| YIF1B protein [Homo sapiens]	6.0E-76	[24..312]	[22..304]
gi\|62339417, gi\|... - gi\|62339417\|ref\|NP_084163.1\| Yip1 interacting factor homolog B [Mus musculus], gi\|12861030\|dbj\|BAB32...	1.0E-74	[24..312]	[25..305]
hrf1 - COPII-coated vesicle component Hrf1 YIF1_SCHPO - Protein transport protein yif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hrf1 PE=3 S...	1.0E-59	[34..312]	[24..292]
CG5484-PA - This gene is referred to in FlyBase by the symbol Dmel\CG5484 (CG5484, FBgn0039450). It is a protein...	2.0E-58	[17..312]	[79..379]
gi\|21280943, gi\|... - gi\|21554340\|gb\|AAM63447.1\| unknown [Arabidopsis thaliana], gi\|21280943\|gb\|AAM44952.1\| unknown protei...	2.0E-56	[42..312]	[10..260]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNPYAYAT SEQNGVNDRF SHTPQQQRPM QIPRNTPVNG QGNANMNANV NGSGGGFPFQ  60
   61 DPRGSMAFQL GQSAFSNFIG QDNFNQFQET VNKATANAAG SQQISTYFQV STRYVINKLK 120
  121 LILVPFLNGT KNWQRIMDSG NFLPPRDDVN SPDMYMPIMG LVTYILIWNT QQGLKGSFNP 180
  181 EDLYYKLSST LAFVCLDLLI LKLGLYLLID SKIPSFSLVE LLCYVGYKFV PLILAQLLTN 240
  241 VTMPFNLNIL IKFYLFIAFG VFLLRSVKFN LLSRSGAEDD DIHVSISKST VKKCNYFLFV 300
  301 YGFIWQNVLM WLMG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	139.420216
Match:	PF03878
Description:	Hrf1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSQQISTYFQ VSTRYVINKL KLILVPFLNG TKNWQRIMDS GNFLPPRDDV NSPDMYMPIM  60
   61 GLVTYILIWN TQQGLKGSFN PEDLYYKLSS TLAFVCLDLL ILKLGLYLLI DSKIPSFSLV 120
  121 ELLCYVGYKF VPLILAQLLT NVTMPFNLNI LIKFYLFIAF GVFLLRSVKF NLLSRSGAED 180
  181 DDIHVSISKS TVKKCNYFLF VYGFIWQNVL MWLMG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.638272
Match:	PF04893.8
Description:	No description for PF04893.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits