YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL260C
Organism:	Saccharomyces cerevisiae
Length:	198 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL260C.

Description	E-value	Query Range	Subject Range
YN00_YEAST - Uncharacterized ORAOV1 family protein YNL260C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... YNL260C - Putative protein of unknown function with similarity to a human protein overexpressed in oral cancer...	8.0E-84	[1..198]	[1..198]
gi\|148686328, gi... - gi\|74142004\|dbj\|BAE41065.1\| unnamed protein product [Mus musculus], gi\|31980738\|ref\|NP_082460.2\| ora...	7.0E-43	[39..158]	[22..144]
YQ68_SCHPO - Uncharacterized ORAOV1 family protein C191.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)... SPCC191.08 - DUF1715 family protein	6.0E-33	[37..163]	[1..134]
gi\|4322016 - gi\|4322016\|gb\|AAD15919.1\| polar flagellar assembly protein FliH [Vibrio parahaemolyticus]	0.006	[40..90]	[66..116]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRNRFIRKM KKNLFKSNHL SYLKSKWKVK ITGQIKMDFD NLLNLEEQYY QEGFLEGQNE  60
   61 NIKQSFLEGK QYGLQVGFQR FTLLGQMEGL CDVIESYGLH SPTLEKNIHT IRTLMKGLKM 120
  121 NNDDESVMEF ERVLIKLKNK FRTILITLHR LVKDKRTPTV TFEVFEDVSR AIAGEIRGFV 180
  181 ENEDIAKNKT KQNQAQSW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits