YRC Public Data Repository - Protein Structure Prediction

Protein:	ATX1
Organism:	Saccharomyces cerevisiae
Length:	73 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATX1.

Description	E-value	Query Range	Subject Range
gi\|115434266, gi... - gi\|34895462\|ref\|NP_909074.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|215740913\|...	3.0E-17	[1..72]	[9..79]
gi\|15221451 - gi\|15221451\|ref\|NP_172122.1\| copper-binding family protein [Arabidopsis thaliana]	4.0E-16	[1..71]	[7..76]
ATP7A - ATPase, Cu++ transporting, alpha polypeptide	4.0E-15	[5..69]	[377..444]
gi\|16418854, gi\|... - gi\|16763733\|ref\|NP_459348.1\| putative cation transport ATPase [Salmonella typhimurium LT2], gi\|16418... gi\|205329472, gi... - gi\|205329472\|gb\|EDZ16236.1\| copper-translocating P-type ATPase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_0412] [protein=putative cation transport ATPase] [protein_id=YP_005236028.1] [location=3...	5.0E-15	[6..68]	[10..72]
gi\|458224 - gi\|458224\|gb\|AAB08487.1\| putative copper efflux ATPase	1.0E-14	[5..69]	[350..417]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEIKHYQFN VVMTCSGCSG AVNKVLTKLE PDVSKIDISL EKQLVDVYTT LPYDFILEKI  60
   61 KKTGKEVRSG KQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	338.927757
Match:	1cc7A_
Description:	ATX1 metallochaperone protein (ATOX1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits