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View Structure Prediction Details

Protein: ATG2
Organism: Saccharomyces cerevisiae
Length: 1592 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG2.

Description E-value Query
Range
Subject
Range
ATG2 - Peripheral membrane protein required for vesicle formation during autophagy, pexophagy, and the cyto...
ATG2_YEAST - Autophagy-related protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG2 PE=1 SV...
0.0 [1..1592] [1..1592]
ATG2_PICPA - Autophagy-related protein 2 OS=Komagataella pastoris GN=ATG2 PE=3 SV=1
0.0 [628..1586] [776..1861]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [781..1417] [853..1534]
gi|14250327 - gi|14250327|gb|AAH08593.1| ATG2A protein [Homo sapiens]
0.0 [1123..1588] [56..515]
gi|19353608 - gi|19353608|gb|AAH24533.1| Atg2b protein [Mus musculus]
4.0E-91 [1256..1586] [144..415]
Atg2-PA, FBpp0305632 - The gene Autophagy-specific gene 2 is referred to in FlyBase by the symbol Dmel\Atg2 (CG1241, FBgn00...
8.0E-90 [1124..1423] [1444..1797]
gi|9294622 - gi|9294622|dbj|BAB02961.1| unnamed protein product [Arabidopsis thaliana]
4.0E-87 [1256..1585] [20..317]

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Predicted Domain #1
Region A:
Residues: [1-1209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFWLPQNIQ KRLLLYVLQQ ISLFSNIDLS NLDVSIGSKS HFSFHDVNLS LDDLNIPNVQ  60
   61 INEGIVDELV LKLTVSGGVE IDGSGLRFIM TPLYSSGSQE LHSDFLVKSI QDLTNSMLQF 120
  121 SDPLTTYNRY KEDDISSSDS SSDLNSNIEA SKPAANGSYT LQNMRNKALN VALAKLKIAL 180
  181 KDVTIRFIVN DRDPSDNIVE VHLESIQLIT TDANLRHINI ENITISSIQK QAVPDSPVHP 240
  241 FNNDDLSQSV YLSKMEATSL YMSAMEEQSN EDPSEPQVTQ EEQENDKCKE SLMEINNLNI 300
  301 AFKGLSSVND LRMSNIVIDI QDVHLAIHKI VEIKNSTLKN IIDIIVTHLD ANESFSCQDS 360
  361 QSPSPDKQEP SALSSVDIKC IYLNLGQDIT VILKSFKLEQ KENNSLAFSL GSFYSNSSPL 420
  421 TISHKTKPLL TGEQTPQSIA LNMGDELDII ISHDGIAHFF KIFQFVSKCM SFYQNKSKGM 480
  481 MPQIASDTKR TVQLTSKAVK LSLKFPYFLL CFQVSPFIYD SNRELYIELV DVFKKLPSRC 540
  541 TKILTMSSIT ISNLQSPLQL GSYDDTLKEA LIYSSVHAII KEVIFNEEYS GIVQLVEDIS 600
  601 AFGKLFTDSK NSECTGKSKS KRGSFLQRSV RVLNSSRFVY KQSLSANFSL KIDSMKLKVS 660
  661 EIIGPQFGSV EALLSNNFFA ITDDSQIVYF TKNLKVERKT PSLLEPQEIM SVVLNKAVNE 720
  721 PVLYVHRRAN GKLKVIFNNI RIHYYARWLE ILKKNIGPDN ASSKDEPVSQ KLSKKQPTSG 780
  781 FPWELKCLDC SLILHPFRLK SVMVIVLDNL TTGGSSFIPQ AKLLSKANTL FLIDDYQNFK 840
  841 IQKDKNWPSL INFYAGQGFS AIGKIDTLNF LINKSDGALL LDCKIEQVGL SLCADSFQTF 900
  901 CQLCIDLKYP QTFPDEEKFR TQLKNPIDVF KDIDCDLFNS AFIRENNHQN DYDSVHLVDS 960
  961 FLDKTHEFNN GARSKLSSQG SYEMDSSSGT ATGGILLPHE SYLDSAQPKE EDTPPIASKE1020
 1021 QERDVDIRGS IDVEKVVIKL FDGYDWKYTR KFIANTVEKL DKELSKAEAS SSKSNVPQSE1080
 1081 ANIFDSIYIS ANKNNVTDLR RNLDGEIQGV QNSFSDVSKV NLRPSKHYKA LIQLNKVHVN1140
 1141 LKNYRVDEPD ESNSDNSTDV LNRCVVSIYE FEIIDNVPTS TWNKFVTLLK HEPWPHSSPM1200
 1201 FLLDLEFIR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [1210-1592]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIDFLQAVEL VMQLNVAPLR LHVDQDTLEF LIRFLGFKDK RFELIDEYPD IVFIQKFSTN  60
   61 SIKLRLDYKP KKVDYAGLRS GQTSELMNFF TLDGSKIILK SVVLYGLNGF DELNNKLKAI 120
  121 WTPDITKKQL PGVLEGLAPV RSFMAIGSGV KTLVTVLMSE YRQEGHLGRS LKKGGNVFLK 180
  181 TTTGDFVKLG VKLTSGTQAI LENTEELFGG VGSNGRVYDA SKFGSADGAD SDTAAVLDLD 240
  241 TLFEEDQLVG SKYSRIRDHE PTAVVIDMSS PGDHNEPTIV SLYADQPLDL PTGLKEAYSS 300
  301 LEKHMHIAYD AVWRAKGQMK DDKRGGPSAA AVYVARAAPV AIIRPLIGAT EAVSKTLQGI 360
  361 ANQVDKTHNE QINDKYKSNR TDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [283-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QENDKCKESL MEINNLNIAF KGLSSVNDLR MSNIVIDIQD VHLAIHKIVE IKNSTLKNII  60
   61 DIIVTHLDAN ESFSCQDSQS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [363-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPDKQEPSA LSSVDIKCIY LNLGQDITVI LKSFKLEQKE NNSLAFSLGS FYSNSSPLTI  60
   61 SHKTKPLLTG EQTPQSIALN MGDELDIIIS HDGIAHFFKI FQFVSKCMSF YQNKSKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [480-635]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPQIASDTK RTVQLTSKAV KLSLKFPYFL LCFQVSPFIY DSNRELYIEL VDVFKKLPSR  60
   61 CTKILTMSSI TISNLQSPLQ LGSYDDTLKE ALIYSSVHAI IKEVIFNEEY SGIVQLVEDI 120
  121 SAFGKLFTDS KNSECTGKSK SKRGSFLQRS VRVLNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [636-779]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRFVYKQSLS ANFSLKIDSM KLKVSEIIGP QFGSVEALLS NNFFAITDDS QIVYFTKNLK  60
   61 VERKTPSLLE PQEIMSVVLN KAVNEPVLYV HRRANGKLKV IFNNIRIHYY ARWLEILKKN 120
  121 IGPDNASSKD EPVSQKLSKK QPTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [780-1012]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPWELKCLD CSLILHPFRL KSVMVIVLDN LTTGGSSFIP QAKLLSKANT LFLIDDYQNF  60
   61 KIQKDKNWPS LINFYAGQGF SAIGKIDTLN FLINKSDGAL LLDCKIEQVG LSLCADSFQT 120
  121 FCQLCIDLKY PQTFPDEEKF RTQLKNPIDV FKDIDCDLFN SAFIRENNHQ NDYDSVHLVD 180
  181 SFLDKTHEFN NGARSKLSSQ GSYEMDSSSG TATGGILLPH ESYLDSAQPK EED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1013-1251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPPIASKEQE RDVDIRGSID VEKVVIKLFD GYDWKYTRKF IANTVEKLDK ELSKAEASSS  60
   61 KSNVPQSEAN IFDSIYISAN KNNVTDLRRN LDGEIQGVQN SFSDVSKVNL RPSKHYKALI 120
  121 QLNKVHVNLK NYRVDEPDES NSDNSTDVLN RCVVSIYEFE IIDNVPTSTW NKFVTLLKHE 180
  181 PWPHSSPMFL LDLEFIRPID FLQAVELVMQ LNVAPLRLHV DQDTLEFLIR FLGFKDKRF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1252-1414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELIDEYPDIV FIQKFSTNSI KLRLDYKPKK VDYAGLRSGQ TSELMNFFTL DGSKIILKSV  60
   61 VLYGLNGFDE LNNKLKAIWT PDITKKQLPG VLEGLAPVRS FMAIGSGVKT LVTVLMSEYR 120
  121 QEGHLGRSLK KGGNVFLKTT TGDFVKLGVK LTSGTQAILE NTE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1415-1592]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELFGGVGSNG RVYDASKFGS ADGADSDTAA VLDLDTLFEE DQLVGSKYSR IRDHEPTAVV  60
   61 IDMSSPGDHN EPTIVSLYAD QPLDLPTGLK EAYSSLEKHM HIAYDAVWRA KGQMKDDKRG 120
  121 GPSAAAVYVA RAAPVAIIRP LIGATEAVSK TLQGIANQVD KTHNEQINDK YKSNRTDS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 54.30103
Match: PF09333.2
Description: No description for PF09333.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle