| Protein: | YTP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 459 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YTP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..459] | [1..459] |
|
|
6.0E-92 | [162..400] | [206..490] |
|
Region A: Residues: [1-118] |
1 11 21 31 41 51
| | | | | |
1 MTAANKNIVF GFSRSISAIL LICFFFEKVC GDMEHDMGMD DTSGYTRPEI VQAGSKSFHW 60
61 LCTLGFLLLL PSVVTCLSFA GRIYSATLLQ CTCAVYAFLE AAVLRFQDND GVENRTSR
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.741 | a.47.2 | t-snare proteins |
| View | Download | 0.748 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.707 | a.63.1 | Apolipophorin-III |
| View | Download | 0.722 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.683 | a.24.3 | Cytochromes |
| View | Download | 0.683 | a.7.1 | Spectrin repeat |
| View | Download | 0.647 | a.7.8 | GAT domain |
| View | Download | 0.563 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.557 | a.24.1 | Apolipoprotein |
| View | Download | 0.484 | a.7.1 | Spectrin repeat |
| View | Download | 0.473 | a.7.7 | BAG domain |
| View | Download | 0.466 | f.21.2 | Fumarate reductase respiratory complex transmembrane subunits |
| View | Download | 0.464 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.458 | a.112.1 | Description not found. |
| View | Download | 0.419 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.411 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.401 | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.389 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.369 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.362 | a.2.7 | tRNA-binding arm |
| View | Download | 0.360 | a.47.2 | t-snare proteins |
| View | Download | 0.359 | a.63.1 | Apolipophorin-III |
| View | Download | 0.353 | a.24.14 | FAT domain of focal adhesion kinase |
| View | Download | 0.339 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.322 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.322 | a.25.1 | Ferritin-like |
| View | Download | 0.322 | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.319 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.304 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.299 | a.1.1 | Globin-like |
| View | Download | 0.296 | d.44.1 | Fe,Mn superoxide dismutase (SOD), C-terminal domain |
| View | Download | 0.291 | a.1.1 | Globin-like |
| View | Download | 0.289 | a.46.1 | Methionine synthase domain |
| View | Download | 0.287 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.280 | a.124.1 | Phospholipase C/P1 nuclease |
| View | Download | 0.271 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.266 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.248 | a.29.2 | Bromodomain |
| View | Download | 0.245 | a.24.4 | Hemerythrin |
| View | Download | 0.244 | a.24.12 | Outer surface protein C (OspC) |
| View | Download | 0.244 | a.47.2 | t-snare proteins |
| View | Download | 0.242 | a.25.1 | Ferritin-like |
| View | Download | 0.241 | d.95.2 | Homing endonucleases |
| View | Download | 0.238 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.235 | a.24.3 | Cytochromes |
| View | Download | 0.235 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.234 | a.26.1 | 4-helical cytokines |
| View | Download | 0.229 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.221 | a.74.1 | Cyclin-like |
| View | Download | 0.207 | a.25.1 | Ferritin-like |
| View | Download | 0.207 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.206 | d.67.3 | Ribosome recycling factor, RRF |
| View | Download | 0.206 | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.202 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.202 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.201 | a.26.1 | 4-helical cytokines |
|
Region A: Residues: [119-459] |
1 11 21 31 41 51
| | | | | |
1 GTAWFLVGLT WITLFFGGLA GGTGFLVKSK RLQTFISNAG EKRLSYIHRG LSFLTVLTGW 60
61 VKVCLAPVAL FGFCREAHTG QCIAHGIMGS AFVLYGFIYV LVLVIPWIRS AQTSYSQDYV 120
121 DSWVMCIWGV VNTFTEHRWG REGWSVHDYQ HTFMGIIWWT GGILGIFLSR NGRRTFVPSL 180
181 IIIFTGWAMS EHAQHLIIST KVHNMFGLVL MCGGALRIIE ISFLLRDKRT LDKIHSFQYL 240
241 APFCLVCSGL LFMGANEEQL ILVLRLGGDH SAYVLIIVSG AFLVYFWMIA CLEFYLYLLE 300
301 KGKQGFLPKS YELEEENNNV SFELDNISNE DVDEDTTPFN V
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
