YRC Public Data Repository - Protein Structure Prediction

Protein:	SSU72
Organism:	Saccharomyces cerevisiae
Length:	206 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSU72.

Description	E-value	Query Range	Subject Range
SSU72 - Transcription/RNA-processing factor that associates with TFIIB and cleavage/polyadenylation factor P... gi\|207341866 - gi\|207341866\|gb\|EDZ69807.1\| YNL222Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409196 - gi\|190409196\|gb\|EDV12461.1\| protein SSU72 [Saccharomyces cerevisiae RM11-1a] gi\|151944322 - gi\|151944322\|gb\|EDN62600.1\| suppressor of sua7, gene 2 [Saccharomyces cerevisiae YJM789] SSU72_YEAST - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae (strain ...	1.0E-92	[1..206]	[1..206]
SSU72_MOUSE - RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=1 SV=1	3.0E-88	[1..206]	[1..194]
CCDS32.1_1 - null SSU72 - SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) gi\|108995563 - gi\|108995563\|ref\|XP_001094964.1\| PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homol... ENSCJAT00000021369 - null gi\|123990476, gi... - gi\|123999318\|gb\|ABM87235.1\| SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) [synthet... gi\|114550590, gi... - gi\|114550590\|ref\|XP_001147261.1\| PREDICTED: Ssu72 RNA polymerase II CTD phosphatase homolog isoform ...	1.0E-87	[1..206]	[1..194]
ssu72 - phosphoric ester hydrolase SSU72_SCHPO - RNA polymerase II subunit A C-terminal domain phosphatase ssu72 OS=Schizosaccharomyces pombe (strain...	7.0E-84	[7..206]	[5..197]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-77	[6..203]	[42..232]
gi\|15219558, gi\|... - gi\|28973307\|gb\|AAO63978.1\| unknown protein [Arabidopsis thaliana], gi\|26453040\|dbj\|BAC43596.1\| unkno...	7.0E-77	[10..206]	[4..193]
gi\|19074334, gi\|... - gi\|19074334\|ref\|NP_585840.1\| SSU72 PROTEIN HOMOLOG [Encephalitozoon cuniculi GB-M1], gi\|19068976\|emb... gi\|19074334 - gi\|19074334\|ref\|NP_585840.1\| SSU72 PROTEIN HOMOLOG [Encephalitozoon cuniculi GB-M1]	1.0E-63	[9..171]	[4..165]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSHRNSNLK FCTVCASNNN RSMESHKVLQ EAGYNVSSYG TGSAVRLPGL SIDKPNVYSF  60
   61 GTPYNDIYND LLSQSADRYK SNGLLQMLDR NRRLKKAPEK WQESTKVFDF VFTCEERCFD 120
  121 AVCEDLMNRG GKLNKIVHVI NVDIKDDDEN AKIGSKAILE LADMLNDKIE QCEKDDIPFE 180
  181 DCIMDILTEW QSSHSQLPSL YAPSYY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits