YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL200C
Organism:	Saccharomyces cerevisiae
Length:	246 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL200C.

Description	E-value	Query Range	Subject Range
gi\|151944342 - gi\|151944342\|gb\|EDN62620.1\| conserved protein [Saccharomyces cerevisiae YJM789] YNL200C - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... gi\|190409176 - gi\|190409176\|gb\|EDV12441.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] NNRE_YEAST - NAD(P)H-hydrate epimerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL200C PE=1 S... gi\|207341830 - gi\|207341830\|gb\|EDZ69777.1\| YNL200Cp-like protein [Saccharomyces cerevisiae AWRI1631]	6.0E-78	[1..246]	[1..246]
PPOX1_ARATH - Pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic OS=Arabidopsis thaliana GN=PPOX1 PE=1 ...	4.0E-62	[4..246]	[73..309]
mug182 - YjeF family protein NNRE_SCHPO - NAD(P)H-hydrate epimerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug182 PE=1 SV=1	6.0E-59	[3..246]	[2..234]
gi\|24640953, gi\|... - gi\|74872437\|sp\|Q9W2Y3.1\|CG974_DROME RecName: Full=YjeF N-terminal domain-containing protein CG2974; ...	2.0E-58	[4..246]	[48..275]
NNR_PYRAE - Bifunctional NAD(P)H-hydrate repair enzyme Nnr OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / ...	5.0E-54	[4..237]	[1..226]
CE21399 - status:Predicted UniProt:Q9XW15 protein_id:CAA22319.1	4.0E-53	[3..246]	[122..346]
NNR_ARCFU - Bifunctional NAD(P)H-hydrate repair enzyme Nnr OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... gi\|7483058 - pir\|\|C69356 conserved hypothetical protein AF0851 - Archaeoglobus fulgidus	1.0E-51	[4..237]	[1..210]
gi\|7514446 - pir\|\|F70418 conserved hypothetical protein aq_1365 - Aquifex aeolicus NNR_AQUAE - Bifunctional NAD(P)H-hydrate repair enzyme Nnr OS=Aquifex aeolicus (strain VF5) GN=nnr PE=3 SV=1	6.0E-50	[4..234]	[1..214]
gi\|15023350, gi\|... - gi\|15893781\|ref\|NP_347130.1\| sugar kinase, N-terminal region - uncharacterized protein [Clostridium ... gi\|25344765 - pir\|\|C96960 uncharacterized conserved protein CAC0490 (probable sugar kinase, N-terminal region) [im...	2.0E-47	[4..230]	[1..218]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLKVVSSK LAAEIDKELM GPQIGFTLQQ LMELAGFSVA QAVCRQFPLR GKTETEKGKH  60
   61 VFVIAGPGNN GGDGLVCARH LKLFGYNPVV FYPKRSERTE FYKQLVHQLN FFKVPVLSQD 120
  121 EGNWLEYLKP EKTLCIVDAI FGFSFKPPMR EPFKGIVEEL CKVQNIIPIV SVDVPTGWDV 180
  181 DKGPISQPSI NPAVLVSLTV PKPCSSHIRE NQTTHYVGGR FIPRDFANKF GFEPFGYEST 240
  241 DQILKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1456.0
Match:	1jztA_
Description:	Hypothetical protein YNL200c (YNU0 YEAST)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.45142390626117	bayes_pls_golite062009
protein binding	0.353172570807791	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: