YRC Public Data Repository - Protein Structure Prediction

Protein:	GCR2
Organism:	Saccharomyces cerevisiae
Length:	534 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCR2.

Description	E-value	Query Range	Subject Range
gi\|50288331, gi\|... - gi\|50288331\|ref\|XP_446594.1\| unnamed protein product [Candida glabrata], gi\|49525902\|emb\|CAG59521.1\|... gi\|49525902 - gi\|49525902\|emb\|CAG59521.1\| unnamed protein product [Candida glabrata]	328.0	[0..1]	[534..1]
gi\|55742055 - ref\|NP_001007209.1\| coagulation factor V [Danio rerio] gi\|55742055, gi\|... - gi\|55742055\|ref\|NP_001007209.1\| coagulation factor V [Danio rerio], gi\|16200178\|emb\|CAC94896.1\| nove...	216.0	[0..11]	[157..1051]
gi\|44980706, gi\|... - gi\|45185070\|ref\|NP_982787.1\| ABL160Cp [Ashbya gossypii ATCC 10895], gi\|44980706\|gb\|AAS50611.1\| ABL16... gi\|44980706 - gi\|44980706\|gb\|AAS50611.1\| ABL160Cp [Ashbya gossypii ATCC 10895]	163.0	[0..134]	[533..69]
gi\|49645149, gi\|... - gi\|50311963\|ref\|XP_456013.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645149\|emb\|CAG9872... gi\|49645149, gi\|... - gi\|49645149\|emb\|CAG98721.1\| KLLA0F20790p [Kluyveromyces lactis], gi\|33145970\|emb\|CAE12198.1\| Gcr2 pr...	100.0	[0..129]	[248..63]
gi\|42557531 - gi\|42557531\|emb\|CAE84434.1\| putative Gcr2 protein [Candida glabrata]	60.0	[0..352]	[533..56]
gi\|67594817 - gi\|67594817\|ref\|XP_665898.1\| SNF2 domain/helicase domain/RING finger domain-containing protein [Cryp... gi\|54656765 - gi\|54656765\|gb\|EAL35669.1\| SNF2 domain/helicase domain/RING finger domain-containing protein [Crypto...	55.0	[0..12]	[112..206]
gi\|109479980, gi... - ref\|XP_243381.2\| similar to RTl1 [Rattus norvegicus], gi\|109479980\|ref\|XP_001070232.1\| PREDICTED: si...	51.0	[0..14]	[161..90]
gi\|46229715 - gi\|46229715\|gb\|EAK90533.1\| protein with DEXDc plus ring plus HELICc; possible SNF2 domain [Cryptospo... gi\|66362534 - gi\|66362534\|ref\|XP_628233.1\| protein with DEXDc plus ring plus HELICc; possible SNF2 domain [Cryptos...	51.0	[0..23]	[178..250]
gi\|50419885, gi\|... - gi\|50419885\|ref\|XP_458475.1\| hypothetical protein DEHA0D00154g [Debaryomyces hansenii CBS767], gi\|49...	50.0	[0..19]	[124..465]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHQTKLDVF IIRAYNLLSN ESVISGASLQ SVTNSPQTTT NTPSGMVNGA VGTGIANPTG  60
   61 LMGSDSTPNI DEIITSTGSN ALTKTNSDSA NGTPNGNSSS TSAISNASNP ATTGNNASSS 120
  121 ATSNGIYTQA QYSQLFAKIS KLYNATLSSG SIDDRST

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKSAIELYQ RFQQMIKELE LSFDASPYAK YFRRLDGRLW QIKTDSELEN DELWRLVSMS  60
   61 IFTVFDPQTG QILTQGRRKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.913	a.64.1	Saposin

Predicted Domain #3

Region A:
Residues: [238-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSLNTSTKGS PSDLQGINNG NNNGNNGNIG NGSNIKNYGN KNMPNNRTKK RGTRVAKNAK  60
   61 NGKNNKNSNK ERNGITDTSA F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [319-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNTTISNPGT NMLFDPSLSQ QLQKRLQTLS QDVNSRSLTG YYTQPTSPGS GGFEFGLSHA  60
   61 DLNPNASSNT MGYNTMSNNG SHSWKRRSLG SLDVNTLDDE AVEELLQLTN TSKRQRPMTT 120
  121 AAEGALINDG PDTNLNANNT QMKVDLNPSN SMGPIDTEAV IRPLKEAYDA IISEKGQRIV 180
  181 QLERELELQR QETQWLRKML IEDMGCVRSM LRDLQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits