YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL194C
Organism:	Saccharomyces cerevisiae
Length:	301 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL194C.

Description	E-value	Query Range	Subject Range
YNT4_YEAST - Uncharacterized plasma membrane protein YNL194C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... gi\|207341836 - gi\|207341836\|gb\|EDZ69783.1\| YNL194Cp-like protein [Saccharomyces cerevisiae AWRI1631] YNL194C - Integral membrane protein required for sporulation and plasma membrane sphingolipid content; has seq... gi\|151944347 - gi\|151944347\|gb\|EDN62625.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..301]	[1..301]
gi\|3850139 - gi\|3850139\|emb\|CAA21940.1\| potential membrane protein [Candida albicans] SUR7_CANAL - Protein SUR7 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SUR7 PE=1 SV=1	5.0E-93	[9..273]	[7..263]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKKFVYFI NLFFLLGATL LTFFLILAGG RTTGVLKNFY WFQASTSGFN SAPSVTRWYN  60
   61 YNWCGWESRG IAVNCSSKMA AQPFSPRDNF GSSPLMPSTF LNNRNAYYYL SRVGWAMLLI 120
  121 GLFFLLITLV SVIASLIRYN RRTAALATAM SWITLFFITL SACLYTGCYA KAVKAFHHEN 180
  181 RDARLGPKNF GLIWTTVFLL IVNAICCTIM VATHKRNEYI YDRSFASTKT VDSQTPTPVP 240
  241 TNGGIPSSVP VTEVQQSQSH QNHRFFKKLR TKKRTVTSAG DEPDRVQEER VYTEQNVPVV 300
  301 S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits