| Protein: | CHS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1131 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CHS1.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1131] | [1..1131] |
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0.0 | [203..1126] | [9..916] |
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0.0 | [191..1128] | [13..920] |
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0.0 | [163..1126] | [17..912] |
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0.0 | [217..1128] | [2..888] |
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0.0 | [172..1126] | [3..919] |
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0.0 | [361..1128] | [2..760] |
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0.0 | [188..1128] | [2..899] |
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0.0 | [228..1126] | [2..900] |
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Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MSDQNNRSRN EYHSNRKNEP SYELQNAHSG LFHSSNEELT NRNQRYTNQN ASMGSFTPVQ 60
61 SLQFPEQSQQ TNMLYNGDDG NNNTINDNER DIYGGFVNHH RQRPPPATAE YNDVFNTNSQ 120
121 QLPSEHQYNN VPSYPLPSIN VI
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| Detection Method: |  |
| Confidence: | 2.69897 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [143-409] |
1 11 21 31 41 51
| | | | | |
1 QTTPELIHNG SQTMATPIER PFFNENDYYY NNRNSRTSPS IASSSDGYAD QEARPILEQP 60
61 NNNMNSGNIP QYHDQPFGYN NGYHGLQAKD YYDDPEGGYI DQRGDDYQIN SYLGRNGEMV 120
121 DPYDYENSLR HMTPMERREY LHDDSRPVND GKEELDSVKS GYSHRDLGEY DKDDFSRDDE 180
181 YDDLNTIDKL QFQANGVPAS SSVSSIGSKE SDIIVSNDNL TANRALKRSG TEIRKFKLWN 240
241 GNFVFDSPIS KTLLDQYATT TENANTL
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| Detection Method: | |
| Confidence: | 14.32 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [410-488] |
1 11 21 31 41 51
| | | | | |
1 PNEFKFMRYQ AVTCEPNQLA EKNFTVRQLK YLTPRETELM LVVTMYNEDH ILLGRTLKGI 60
61 MDNVKYMVKK KNSSTWGPD
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.451 | d.26.1 | FKBP-like |
| View | Download | 0.579 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.633 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.350 | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.360 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.304 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.300 | c.110.1 | D-Tyr tRNAtyr deacylase, DTD |
| View | Download | 0.298 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.296 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.291 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.281 | d.6.1 | Prion-like |
| View | Download | 0.249 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.246 | d.58.13 | Anticodon-binding domain of PheRS |
| View | Download | 0.244 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.236 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.235 | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.235 | a.46.1 | Methionine synthase domain |
| View | Download | 0.226 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.222 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.220 | d.68.4 | YhbY-like |
| View | Download | 0.219 | d.15.11 | Doublecortin (DC) |
| View | Download | 0.204 | c.1.8 | (Trans)glycosidases |
| View | Download | 0.204 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.204 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.202 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.202 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.200 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
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Region A: Residues: [489-565] |
1 11 21 31 41 51
| | | | | |
1 AWKKIVVCII SDGRSKINER SLALLSSLGC YQDGFAKDEI NEKKVAMHVY EHTTMINITN 60
61 ISESEVSLEC NQGTVPI
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|
Region B: Residues: [696-855] |
1 11 21 31 41 51
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1 YGEIMENEGF HFFSSNMYLA EDRILCFEVV TKKNCNWILK YCRSSYASTD VPERVPEFIL 60
61 QRRRWLNGSF FASVYSFCHF YRVWSSGHNI GRKLLLTVEF FYLFFNTLIS WFSLSSFFLF 120
121 FRILTVSIAL AYHSAFNVLS VIFLWLYGIC TLSTFILSLG
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| Detection Method: | |
| Confidence: | 7.7 |
| Match: | 1dioA |
| Description: | Diol dehydratase, alpha subunit |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [566-695] |
1 11 21 31 41 51
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1 QLLFCLKEQN QKKINSHRWA FEGFAELLRP NIVTLLDAGT MPGKDSIYQL WREFRNPNVG 60
61 GACGEIRTDL GKRFVKLLNP LVASQNFEYK MSNILDKTTE SNFGFITVLP GAFSAYRFEA 120
121 VRGQPLQKYF
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| Detection Method: | |
| Confidence: | 7.7 |
| Match: | 1dioA |
| Description: | Diol dehydratase, alpha subunit |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transferase activity, transferring hexosyl groups | 2.23446625487311 | bayes_pls_golite062009 |
| UDP-glycosyltransferase activity | 1.84596125277114 | bayes_pls_golite062009 |
| catalytic activity | 1.73979371332125 | bayes_pls_golite062009 |
| transferase activity | 1.18156663897445 | bayes_pls_golite062009 |
| acetylgalactosaminyltransferase activity | 0.823843077041128 | bayes_pls_golite062009 |
| cytidylyltransferase activity | 0.666765511953956 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.641710647713692 | bayes_pls_golite062009 |
| binding | 0.61043334112269 | bayes_pls_golite062009 |
| polypeptide N-acetylgalactosaminyltransferase activity | 0.600389101620522 | bayes_pls_golite062009 |
| transferase activity, transferring glycosyl groups | 0.539883035270389 | bayes_pls_golite062009 |
| glucuronosyltransferase activity | 0.510390802401046 | bayes_pls_golite062009 |
| mannosyltransferase activity | 0.505948108814334 | bayes_pls_golite062009 |
| glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity | 0.360354014290234 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.301396160525425 | bayes_pls_golite062009 |
| UDP-N-acetylglucosamine diphosphorylase activity | 0.0309517682490415 | bayes_pls_golite062009 |
|
Region A: Residues: [856-908] |
1 11 21 31 41 51
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1 NKPKSTEKFY VLTCVIFAVM MIYMIFCSIF MSVKSFQNIL KNDTISFEGL ITT
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.408 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.417 | a.4.1 | Homeodomain-like |
| View | Download | 0.475 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.432 | g.2.2 | Neurotoxin B-IV |
| View | Download | 0.370 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.368 | a.4.1 | Homeodomain-like |
| View | Download | 0.362 | a.157.1 | Skp1 dimerisation domain-like |
| View | Download | 0.356 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.352 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.351 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.346 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.338 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.331 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.324 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.317 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.315 | a.30.1 | ROP protein |
| View | Download | 0.301 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.275 | a.2.7 | tRNA-binding arm |
| View | Download | 0.271 | g.2.1 | Heat-stable enterotoxin B |
| View | Download | 0.265 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.257 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.255 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.247 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.213 | a.112.1 | Description not found. |
| View | Download | 0.212 | g.34.1 | HIV-1 VPU cytoplasmic domain |
| View | Download | 0.208 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.206 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.205 | a.64.1 | Saposin |
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Region A: Residues: [909-1131] |
1 11 21 31 41 51
| | | | | |
1 EAFRDIVISL GSTYCLYLIS SIIYLQPWHM LTSFIQYILL SPSYINVLNI YAFCNVHDLS 60
61 WGTKGAMANP LGKINTTEDG TFKMEVLVSS SEIQANYDKY LKVLNDFDPK SESRPTEPSY 120
121 DEKKTGYYAN VRSLVIIFWV ITNFIIVAVV LETGGIADYI AMKSISTDDT LETAKKAEIP 180
181 LMTSKASIYF NVILWLVALS ALIRFIGCSI YMIVRFFKKV TFR
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
