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View Structure Prediction Details

Protein: KAR1
Organism: Saccharomyces cerevisiae
Length: 433 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KAR1.

Description E-value Query
Range
Subject
Range
gi|171777 - gi|171777|gb|AAA34716.1| KAR1 [Saccharomyces cerevisiae]
778.0 [0..1] [433..1]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVTSPKDGN HSFSKKNRFN TNKPRFHKLN EQAQSINLPE DRDSIVSSNT TSIMTDDAFD  60
   61 YNEGIASRTK NINSDSDRSN DTIKQNNYNK RETGYN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFYNGSGINQ RYTQFRKREF EPTLAENKAE EYISDEDNVK IDEDNIENEL QFTPKIKEAS  60
   61 ILRSSLLGQR NVLNTRNPKS KESHIKVKPI INNKSSSQRK SSAALRKQLG KPLPLPYLNS 120
  121 PN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDSTPTLQRK EEVFTDEVLQ KKRELIESKW HRLLFHDKKM VEKKLESLRE YERKRMPPRG  60
   61 TDVSSSEQDN SFKISTPTKS YVSLEQKPLP NLSAMNNFND VTDNKEKEET N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [330-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNILKFQAQR DPLQILQSEI EMHTKKLDTI IELLKDDTDS KEKRKVVTND NAAPEQMVNK  60
   61 GWRKNVMMIY KKSGNIMKKY REYFLWTICI LILLYCNIYV YYRF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle