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View Structure Prediction Details

Protein: SWT21
Organism: Saccharomyces cerevisiae
Length: 357 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWT21.

Description E-value Query
Range
Subject
Range
SWT21_YEAS7 - Protein SWT21 OS=Saccharomyces cerevisiae (strain YJM789) GN=SWT21 PE=3 SV=1
SWT21 - Protein involved in mRNA splicing; contains a consensus nuclear export signal (NES) sequence similar...
SWT21_YEAS1 - Protein SWT21 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SWT21 PE=3 SV=1
SWT21_YEAST - Protein SWT21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWT21 PE=1 SV=1
SWT21_YEAS6 - Protein SWT21 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SWT21 PE=3 SV=2
0.0 [1..357] [1..357]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKVICQDI FWSCDGTSFV SVHNDFGIRQ YLVPEESNTD KLNRNLLLPF TRFFRNQSIV  60
   61 SCAIDPFYTL YNENSDRLAG DRIVVGGKNF PLQLYSLMDG QCILSYDTMN KINGEYETVY 120
  121 SVKIDVESRV YTGSCRNKVA IYDKSRRDAV WMNQSTKKAS KGRQSIISCF EEQPMGGQAL 180
  181 SRGSLLCGSY ANEMFQVDCR HQRLERLNYT RTVAGGIVQI LTSDNGRYVY VVRRNSDAIS 240
  241 IYDRRNLQHE LNVLRLPFRI HHNSAKLKAY IDTAYGLSMG TPQGTILNWG RDLVEFGGVP 300
  301 SHNSVEDPLI TSIPPESEWR TNLDSTIPAT VVKNCPGDPE LFALSHGGTI SLCRFGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle