YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL19
Organism:	Saccharomyces cerevisiae
Length:	158 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL19.

Description	E-value	Query Range	Subject Range
RL11_STRSF - 50S ribosomal protein L11 OS=Streptomyces sp. (strain FRI-5) GN=rplK PE=3 SV=1 gi\|303918, gi\|541505 - pir\|\|S40772 ribosomal protein L11 - Streptomyces sp, gi\|303918\|dbj\|BAA03346.1\| L11 equivalent ribos...	1.0E-43	[1..156]	[1..142]
RL11_THET2 - 50S ribosomal protein L11 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplK PE... RL11_THETH - 50S ribosomal protein L11 OS=Thermus thermophilus GN=rplK PE=1 SV=2 RL11_THET8 - 50S ribosomal protein L11 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplK PE=1 S... gi\|2120599 - gi\|2120599\|pir\|\|S66576 ribosomal protein L11 - Thermus aquaticus	3.0E-43	[4..157]	[2..139]
RL11_STACT - 50S ribosomal protein L11 OS=Staphylococcus carnosus (strain TM300) GN=rplK PE=3 SV=2 RL11_STACA - 50S ribosomal protein L11 OS=Staphylococcus carnosus GN=rplK PE=3 SV=2	4.0E-43	[1..156]	[1..139]
RL11A_BACHD, R11... - 50S ribosomal protein L11-1 OS=Bacillus halodurans GN=rplK1 PE=3 SV=1, (Q9KGE6) 50S ribosomal protei... RL11A_BACHD - 50S ribosomal protein L11-1 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JC...	6.0E-43	[1..156]	[1..139]
RL12_MOUSE - 60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2 gi\|51858795 - gb\|AAH82199.1\| MGC98766 protein [Xenopus laevis]	8.0E-43	[1..157]	[1..144]
gi\|114618815 - gi\|114618815\|ref\|XP_001137362.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|194033612 - gi\|194033612\|ref\|XP_001926610.1\| PREDICTED: ribosomal protein L12 [Sus scrofa] RPL12 - ribosomal protein L12 gi\|60654803 - gi\|60654803\|gb\|AAX31966.1\| ribosomal protein L12 [synthetic construct] RL12_CANLF - 60S ribosomal protein L12 OS=Canis lupus familiaris GN=RPL12 PE=1 SV=1 ENSCJAT000000436... - null, null RL12_BOVIN - 60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1 HGNC:10302\|MIM:1... - protein L12	9.0E-43	[1..157]	[1..144]
RL12_RAT - 60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1 gi\|57680 - gi\|57680\|emb\|CAA37581.1\| unnamed protein product [Rattus rattus]	9.0E-43	[1..157]	[1..144]
RL11_SYNY3 - 50S ribosomal protein L11 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rplK PE=3 SV=1 gi\|1075628 - gi\|1075628\|pir\|\|C49316 ribosomal protein L11 - Synechocystis sp RL11_SYNY3 - 50S ribosomal protein L11 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=rplK PE=3 SV=...	1.0E-42	[1..156]	[1..139]
RL11_CLOAB - 50S ribosomal protein L11 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG ... RL11_CLOAB - 50S ribosomal protein L11 OS=Clostridium acetobutylicum GN=rplK PE=3 SV=1	2.0E-42	[1..157]	[1..140]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAAKNVIV KLIVGAGQAA PSPPVGPALG SKGIKAIDFC KEFNARSANY QPGVPVPVLI  60
   61 TIKPDRTFTF EMKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	247.626727
Match:	1giyL_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [75-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPTGYLLLKA LKMDKGHGQP NVGTMLGSAP AKGPTRALGE LSLKHVYEIA KIKKSDERHS  60
   61 LLEMEGIVKS IVGVAKSMGI KVVP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	247.626727
Match:	1giyL_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits