YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL181W
Organism:	Saccharomyces cerevisiae
Length:	407 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL181W.

Description	E-value	Query Range	Subject Range
YNL181W - Putative oxidoreductase; required for cell viability	2.0E-96	[1..407]	[1..407]
gi\|115434568, gi... - gi\|9663977\|dbj\|BAB03618.1\| putative pod-specific dehydrogenase SAC25 [Oryza sativa Japonica Group], ...	3.0E-78	[26..379]	[1..321]
gi\|15292559 - gi\|15292559\|gb\|AAK93548.1\| SD07613p [Drosophila melanogaster]	2.0E-76	[37..376]	[27..323]
gi\|7485438, gi\|2... - pir\|\|T02520 probable oxidoreductase [imported] - Arabidopsis thaliana, gi\|3236237\|gb\|AAC23625.1\| pu...	1.0E-73	[30..379]	[8..321]
WWOX_MOUSE - WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1	3.0E-73	[35..374]	[98..405]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-73	[26..377]	[1..319]
gi\|20070272, gi\|... - gi\|9622124\|gb\|AAF89632.1\|AF167438_1 androgen-regulated short-chain dehydrogenase/reductase 1 [Homo s...	5.0E-73	[29..376]	[18..315]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLNIIGTAL LDGTDKIPYY QTIKKVAPYV LATGAIKYWS RGPSNTWERK LHGKVYLVTG  60
   61 ATSQGMGTSV AYKMAELGAQ LIILTREVDE WVTEWCEELR EKTKNELIFV EKCDLSNLWE 120
  121 IRKFATSWLD NSPPRRLDGV IVMSGDMEPW GIPKISLPQR RSSKDGLELQ IATNYVAIFH 180
  181 LLNLLQPSFK AQPPDRDVRI ILATCWLQVV GDINIEDPLW QNAKYKSALK FFASSKLQLG 240
  241 LSMMELQRRL TEDIKNQKTN GPERTGKNVT ITMVQPGTMR SNSLRRVISN GSVVLLIILY 300
  301 CILLYPILWL FTKSGRRGDQ SFLYALMTPE LEEVNLKDTK VKYISDCSIV KFARKEFDDE 360
  361 ELQKKLFDNT ERDILQLEKK VAAKRNANKT GNQNSKKKSQ NKSRKDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1gcoA_
Description:	Glucose dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits