YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS3
Organism:	Saccharomyces cerevisiae
Length:	240 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS3.

Description	E-value	Query Range	Subject Range
RPS3 - ribosomal protein S3 gi\|208967330, gi... - gi\|208967330\|dbj\|BAG73679.1\| ribosomal protein S3 [synthetic construct], gi\|123999104\|gb\|ABM87135.1\|... RS3_BOVIN - 40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1 CCDS8236.1_1 - null gi\|223973891 - gi\|223973891\|gb\|ACN31133.1\| unknown [Zea mays] gi\|109107963 - gi\|109107963\|ref\|XP_001086020.1\| PREDICTED: similar to ribosomal protein S3 [Macaca mulatta] gi\|187609257 - gi\|187609257\|pdb\|2ZKQ\|CC Chain c, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Compl... RS3_PIG - 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=1 SV=1	3.0E-74	[1..238]	[1..240]
ENSOCUP00000018598 - pep:novel chromosome:oryCun2:1:141307967:141313167:-1 gene:ENSOCUG00000022412 transcript:ENSOCUT0000... gi\|57728 - gi\|57728\|emb\|CAA35916.1\| unnamed protein product [Rattus rattus] gi\|55715858 - gb\|AAH86122.1\| Unknown (protein for MGC:98523) [Xenopus laevis] RS3_MOUSE - 40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1 RS3_CANLF - 40S ribosomal protein S3 OS=Canis lupus familiaris GN=RPS3 PE=1 SV=1 gi\|149719291 - gi\|149719291\|ref\|XP_001494894.1\| PREDICTED: similar to 40S ribosomal protein S3 [Equus caballus] RS3_RAT - 40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=1 SV=1 tr\|M3WG22\|M3WG22... - Uncharacterized protein OS=Felis catus GN=RPS3 PE=3 SV=1	6.0E-74	[1..238]	[1..240]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-74	[1..238]	[1..240]
RS3_ICTPU - 40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1	7.0E-70	[1..236]	[1..238]
RS32_XENLA - 40S ribosomal protein S3-B OS=Xenopus laevis GN=rps3-b PE=2 SV=1	1.0E-67	[1..228]	[1..230]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALISKKRK LVADGVFYAE LNEFFTRELA EEGYSGVEVR VTPTKTEVII RATRTQDVLG  60
   61 ENGRRINELT LLVQKRFKYA PGTIVLYAER V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1008.0
Match:	1k5xC_
Description:	No description for 1k5xC_ was found.

Predicted Domain #2

Region A:
Residues: [92-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDRGLSAVAQ AESMKFKLLN GLAIRRAAYG VVRYVMESGA KGCEVVVSGK LRAARAKAMK  60
   61 FADGFLIHSG QPVNDFIDTA TRHVLMRQGV LGIKVKIMRD PAKSRTGPKA LPDAVTIIEP 120
  121 KEEEPILAPS VKDYRPAEET EAQAEPVEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1008.0
Match:	1k5xC_
Description:	No description for 1k5xC_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits