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View Structure Prediction Details

Protein: TDA7
Organism: Saccharomyces cerevisiae
Length: 636 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDA7.

Description E-value Query
Range
Subject
Range
gi|16554449, gi|... - gi|16554449|ref|NP_003377.1| zonadhesin isoform 3 [Homo sapiens], gi|12667414|gb|AAK01433.1|AF332977...
7.0E-69 [15..474] [543..998]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSNSTIGRT TLGESDTISL SFSEPSSSLN SRSTDVVFAS TSTLVPQQGS LTSLPPVSST  60
   61 ATPTYYSTSL TYDETL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.441 b.71.1 Glycosyl hydrolase domain
View Download 0.475 a.28.1 ACP-like
View Download 0.521 d.10.1 DNA-binding domain
View Download 0.642 d.54.1 Enolase N-terminal domain-like
View Download 0.372 d.42.1 POZ domain
View Download 0.363 d.19.1 MHC antigen-recognition domain
View Download 0.349 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.348 b.43.4 Riboflavin synthase domain-like
View Download 0.336 b.82.1 RmlC-like cupins
View Download 0.326 d.95.2 Homing endonucleases
View Download 0.282 d.94.1 HPr-like
View Download 0.257 a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.249 d.82.1 Copper amine oxidase, domain N
View Download 0.216 b.13.3 Description not found.

Predicted Domain #2
Region A:
Residues: [77-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTSIDVSSTS TLVSSTDSSS SSEQDTYSSQ YDPATSSYSI ITPSMSIFSS TSPMSSSSSI  60
   61 TSEWSSLTST TPTLSSSATS LSSSWSSLSS PSSLLVSSSL SLSLSSSYSD TKLFSFDSRS 120
  121 SIFSPSTPTV ISPSYTYLS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [298-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPTSSSVSSS SS

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.14
Match: 1mvmA
Description: Parvovirus (panleukopenia virus) capsid protein
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [216-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SISATSFQIS TTSELSSSWF STISSPSTIS NKDTTCPSSS RNTSTSFYSS SLSSTNDFST  60
   61 ISKSSKLSPS ASSSTVSIST IS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [310-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVPSNRPSSS SSSDDTTSAY SSTYTFQSLQ STTSSSIPPT TQTPSTSTIS TSPIPTSSQV  60
   61 FNTVAISSSE DSKTIYYFYT QTYDITDSST T

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.14
Match: 1mvmA
Description: Parvovirus (panleukopenia virus) capsid protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [401-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVTGLPTTIA VAKSEVTSFS APSSTITADM SFYQHWLDGS LDNNKNQGTS KTNTGTIVGS  60
   61 VVGSVGGILI CVLVVWFMLV RKRKAKRHFK ENDSFCHEIG RRTGFPTTAQ AKEASLQAQD 120
  121 SGSQQRNTET ASANN

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.25
Match: 1ei3A
Description: Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [536-636]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSNEFNFKA RGNPPPVPPP RNVTAMNGSF QNMRSNFMDQ ENRFSYGSSF TYSSLGSSTQ  60
   61 GGFSTLSSNS IRLGRGLDND ISHDERNTVQ NNSQGFLREI I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.372 a.3.1 Cytochrome c
View Download 0.428 a.74.1 Cyclin-like
View Download 0.234 a.77.1 DEATH domain
View Download 0.288 c.78.2 Aspartate/glutamate racemase
View Download 0.381 a.165.1 Myosin phosphatase inhibitor 17kDa protein, CPI-17
View Download 0.223 d.15.1 Ubiquitin-like
View Download 0.221 a.3.1 Cytochrome c
View Download 0.220 a.90.1 Transcription factor STAT-4 N-domain
View Download 0.206 c.51.1 Anticodon-binding domain of Class II aaRS


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle