YRC Public Data Repository - Protein Structure Prediction

Protein:	BNI5
Organism:	Saccharomyces cerevisiae
Length:	448 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BNI5.

Description	E-value	Query Range	Subject Range
MDN1 - Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex... MDN1_YEAST - Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDN1 PE=1 SV=1	0.0	[2..411]	[4277..4711]
CG13185-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13185 (CG13185, FBgn0033661). It is a prote...	4.0E-86	[4..411]	[4677..5106]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	1.0E-79	[1..411]	[4084..4512]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-43	[9..348]	[114..471]
gi\|19171103, gi\|... - gi\|19173514\|ref\|NP_597317.1\| putative protein of the CBBQ/NORQ/NIRQ/GVPN family [Encephalitozoon cun... gi\|19173514 - gi\|19173514\|ref\|NP_597317.1\| putative protein of the CBBQ/NORQ/NIRQ/GVPN family [Encephalitozoon cun...	8.0E-43	[108..410]	[2389..2686]
gi\|242373271, gi... - gi\|242373271\|ref\|ZP_04818845.1\| autolysin [Staphylococcus epidermidis M23864:W1], gi\|242348981\|gb\|EE... gi\|13272276 - gi\|13272276\|gb\|AAK17065.1\| fibronectin binding autolysin [Staphylococcus caprae]	2.0E-38	[3..286]	[43..328]
NCKX1_RAT - Sodium/potassium/calcium exchanger 1 OS=Rattus norvegicus GN=Slc24a1 PE=2 SV=1	5.0E-38	[36..327]	[650..929]
gi\|15900565, gi\|... - gi\|15900565\|ref\|NP_345169.1\| zinc metalloprotease ZmpB, putative [Streptococcus pneumoniae TIGR4], g... gi\|6911257, gi\|2... - gi\|6911257\|gb\|AAF31454.1\|AF221126_3 putative zinc metalloprotease [Streptococcus pneumoniae], pir\|\|H...	9.0E-36	[1..277]	[132..410]
gi\|15242427, gi\|... - gi\|9758742\|dbj\|BAB09180.1\| unnamed protein product [Arabidopsis thaliana], gi\|15242427\|ref\|NP_199365...	6.0E-31	[2..340]	[572..903]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDQDKIKK RLSQIEIDIN QMNQMIDENL QLVEPAEDEA VEDNVKDTGV VDAVKVAETA  60
   61 LFSGNDGADS NPGDSAQVEE HKTAQVHIPT ENEANKSTDD PSQLSVTQPF IAK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #2

Region A:
Residues: [114-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQITHTAIAI GDSYNSFVAN SAGNEKAKDS CTENKEDGTV NIDQNRGEAD VEIIENNDDE  60
   61 WEDEKSDVEE GRVDKGT

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [191-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EENSEIESFK SPMPQNNTLG GENKLDAELV LDKFSSANKD LDIQPQTIVV GGDNEYNHES  60
   61 SRLADQTPHD DNSENC

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.63
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [267-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNRSGGSTPL DSQTKIFIPK KNSKEDGTNI NHFNSDGDGQ KKMANFETRR PTNPFRVISV  60
   61 SSNSNSRNGS RKSSLNKYDS PVSSPITSAS ELGSIAKLEK RHDYLSMKCI KLQKEIDYLN 120
  121 KMNAQGSLSM EDGKRLHRAV VKLQEYLDKK TKEKYEVGVL LSRHLRKQID RGENGQFWIG 180
  181 TK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits