YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL155W
Organism:	Saccharomyces cerevisiae
Length:	274 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL155W.

Description	E-value	Query Range	Subject Range
YNL155W - Putative protein of unknown function, contains DHHC domain, also predicted to have thiol-disulfide o... gi\|190409140 - gi\|190409140\|gb\|EDV12405.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] CUZ1_YEAST - CDC48-associated ubiquitin-like/zinc finger protein 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	0.0	[1..274]	[1..274]
gi\|19483920 - gi\|19483920\|gb\|AAH23352.1\| Zfand1 protein [Mus musculus]	2.0E-81	[12..239]	[3..222]
gi\|10436353, gi\|... - gi\|13375985\|ref\|NP_078975.1\| zinc finger, AN1-type domain 1 [Homo sapiens], gi\|10436353\|dbj\|BAB14813...	1.0E-79	[12..239]	[4..223]
aip-1 - status:Confirmed UniProt:Q9XUW8 protein_id:CAB04515.1	5.0E-33	[13..134]	[6..167]
SAP12_ARATH - Zinc finger AN1 domain-containing stress-associated protein 12 OS=Arabidopsis thaliana GN=SAP12 PE=2...	2.0E-30	[13..130]	[11..168]
gi\|2649403, gi\|1... - gi\|2649403\|gb\|AAB90062.1\| predicted coding region AF_1187 [Archaeoglobus fulgidus DSM 4304], gi\|1149... gi\|7483570 - pir\|\|B69398 hypothetical protein AF1187 - Archaeoglobus fulgidus	6.0E-18	[18..75]	[4..64]

Back

Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAIEKETG MLDVGKHCAY CRQLDFLPFH CSFCNEDFCS NHRLKEDHHC RWLLEHEEVH  60
   61 KTEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.657577
Match:	PF01428
Description:	AN1-like Zinc finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [65-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSKSRDGSS SNDEAYFKSL LPERASVRIQ RVSETREPLR GSNTAKVSST LNSKTLDKIF  60
   61 KFFQRNEKRK SNNKSKKNFG SSSNKIIQLA NLKKIAKGDP KIPMQNRIYI WCYLVDGDET 120
  121 DIAKEDTRMP LYINKMWPVG RAMDYLSIQL NVKSSTLTNS SSNDKFQLCK LKEGKQVSFY 180
  181 NIGASLRVTN EIKDLDTLYL VHNNADEKSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits