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View Structure Prediction Details

Protein: LSM7
Organism: Saccharomyces cerevisiae
Length: 107 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM7.

Description E-value Query
Range		 Subject
Range
gi|190409133 - gi|190409133|gb|EDV12398.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
LSM7 - Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytopla...
 1.0E-22 [1..107] [1..107]
gi|190247 - gi|190247|gb|AAA60151.1| snRNP polypeptide B [Homo sapiens]
 8.0E-21 [22..103] [9..92]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 2.0E-20 [22..103] [9..92]
gi|3142634 - gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus]
 3.0E-20 [22..103] [9..92]
RSMB_MACEU - Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1
 3.0E-20 [22..103] [9..92]
gi|50540540, gi|... - gi|8099650|gb|AAF72188.1| snRNP-associated protein; SmB [Danio rerio], gi|50540540|ref|NP_991230.1| ...
 5.0E-20 [22..103] [9..92]
RSMB_CHICK - Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus GN=SNRPB PE=2 SV=1
 1.0E-19 [22..103] [9..92]

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Predicted Domain #1
Region A:
Residues: [1-107] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQQHSQRKK FEGPKREAIL DLAKYKDSKI RVKLMGGKLV IGVLKGYDQL MNLVLDDTVE  60
   61 YMSNPDDENN TELISKNARK LGLTVIRGTI LVSLSSAEGS DVLYMQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.512579
Match: 1d3bB_
Description: B core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
9.36615441177233 bayes_pls_golite062009
RNA binding 5.81718051012035 bayes_pls_golite062009
nucleic acid binding 2.69031444148163 bayes_pls_golite062009
mRNA binding 2.57166143288861 bayes_pls_golite062009
binding 2.04681172391952 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle