YRC Public Data Repository - Protein Structure Prediction

Protein:	MFA2
Organism:	Saccharomyces cerevisiae
Length:	38 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MFA2.

Description	E-value	Query Range	Subject Range
gi\|190404616 - gi\|190404616\|gb\|EDV07883.1\| a-factor mating pheromone precursor [Saccharomyces cerevisiae RM11-1a] MFA1_YEAST - Mating hormone A-factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MFA1 PE=1 SV=1 gi\|151942425 - gi\|151942425\|gb\|EDN60781.1\| a-factor mating pheromone precursor [Saccharomyces cerevisiae YJM789] MFA1 - Mating pheromone a-factor, made by a cells; interacts with alpha cells to induce cell cycle arrest a...	60.0	[0..1]	[38..1]
gi\|24940426, gi\|... - gi\|24940428\|emb\|CAD56313.1\| a-pheromone [Saccharomyces paradoxus], gi\|24940426\|emb\|CAD56312.1\| a-phe...	58.0	[0..1]	[38..1]

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Predicted Domain #1

Region A:
Residues: [1-38]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPITTASTQ ATQKDKSSEK KDNYIIKGLF WDPACVIA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.492	b.72.1	WW domain
View	Download	0.422	g.3.8	Cellulose-binding domain
View	Download	0.418	g.41.3	Zinc beta-ribbon
View	Download	0.412	g.64.1	Somatomedin B domain
View	Download	0.409	g.41.5	Rubredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits