YRC Public Data Repository - Protein Structure Prediction

Protein:	MEP2
Organism:	Saccharomyces cerevisiae
Length:	499 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MEP2.

Description	E-value	Query Range	Subject Range
MEP2_YEAST - Ammonium transporter MEP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MEP2 PE=1 SV=1 MEP2 - Ammonium permease involved in regulation of pseudohyphal growth; belongs to a ubiquitous family of c...	0.0	[1..499]	[1..499]
gi\|67900952, gi\|... - gi\|67900952\|ref\|XP_680732.1\| hypothetical protein AN7463.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... gi\|18693013 - gi\|18693013\|gb\|AAL73117.1\| ammonium transporter MEAA [Emericella nidulans]	0.0	[2..457]	[15..471]
gi\|17221150 - gi\|17221150\|gb\|AAL11032.1\| high affinity ammonium transporter [Tuber borchii]	0.0	[13..467]	[20..468]
amt1 - ammonium transporter Amt1 AMT1_SCHPO - Ammonium transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=amt1 PE=3 SV=1	0.0	[1..468]	[1..462]
gi\|85104138 - gi\|85104138\|ref\|XP_961677.1\| ammonium transporter MEP2 [Neurospora crassa OR74A] gi\|32412156, gi\|... - gi\|32412156\|ref\|XP_326558.1\| hypothetical protein [Neurospora crassa], gi\|28923225\|gb\|EAA32441.1\| am...	0.0	[4..456]	[8..459]
gi\|5230672 - gi\|5230672\|gb\|AAD40955.1\|AF159568_1 ammonium transporter MEPa [Microbotryum violaceum]	0.0	[1..446]	[4..436]
gi\|15808693 - gi\|15808693\|gb\|AAL08424.1\|AF187870_1 probable ammonium transporter MEP1 [Ustilago maydis]	0.0	[6..490]	[26..500]

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Predicted Domain #1

Region A:
Residues: [1-499]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNFTGTPT GEGTGGNSLT TDLNTQFDLA NMGWIGVASA GVWIMVPGIG LLYSGLSRKK  60
   61 HALSLLWASM MASAVCIFQW FFWGYSLAFS HNTRGNGFIG TLEFFGFRNV LGAPSSVSSL 120
  121 PDILFAVYQG MFAAVTGALM LGGACERARL FPMMVFLFLW MTIVYCPIAC WVWNAEGWLV 180
  181 KLGSLDYAGG LCVHLTSGHG GLVYALILGK RNDPVTRKGM PKYKPHSVTS VVLGTVFLWF 240
  241 GWMFFNGGSA GNATIRAWYS IMSTNLAAAC GGLTWMVIDY FRCGRKWTTV GLCSGIIAGL 300
  301 VGITPAAGFV PIWSAVVIGV VTGAGCNLAV DLKSLLRIDD GLDCYSIHGV GGCIGSVLTG 360
  361 IFAADYVNAT AGSYISPIDG GWINHHYKQV GYQLAGICAA LAWTVTVTSI LLLTMNAIPF 420
  421 LKLRLSADEE ELGTDAAQIG EFTYEESTAY IPEPIRSKTS AQMPPPHENI DDKIVGNTDA 480
  481 EKNSTPSDAS STKNTDHIV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	197.408935
Match:	PF00909
Description:	Ammonium Transporter Family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits