| Protein: | SRV2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 526 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRV2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [11..524] | [2..475] |
|
|
0.0 | [12..524] | [3..474] |
|
|
0.0 | [11..524] | [2..475] |
|
|
0.0 | [11..526] | [2..474] |
|
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0.0 | [1..526] | [1..526] |
|
|
0.0 | [11..526] | [2..475] |
|
|
0.0 | [109..524] | [1..399] |
|
Region A: Residues: [1-39] |
1 11 21 31 41 51
| | | | | |
1 MPDSKYTMQG YNLVKLLKRL EEATARLEDV TIYQEGYIQ
|
|
Region B: Residues: [80-127] |
1 11 21 31 41 51
| | | | | |
1 AFQSYIGENI DPLVELSGKI DTVVLDALQL LKGGFQSQLT FLRAAVRS
|
|
Region C: Residues: [136-247] |
1 11 21 31 41 51
| | | | | |
1 TFADSLRPIN ENIIKLGQLK ESNRQSKYFA YLSALSEGAP LFSWVAVDTP VSMVTDFKDA 60
61 AQFWTNRILK EYRESDPNAV EWVKKFLASF DNLKAYIKEY HTTGVSWKKD GM
|
| Detection Method: |  |
| Confidence: | 7.03 |
| Match: | 1k7lA |
| Description: | Peroxisome proliferator activated receptor alpha, PPAR-alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 5.81884714997094 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 4.39652693178112 | bayes_pls_golite062009 |
| adenylate cyclase binding | 2.08284870927262 | bayes_pls_golite062009 |
| binding | 1.8340549733034 | bayes_pls_golite062009 |
| enzyme binding | 1.53072876683435 | bayes_pls_golite062009 |
| protein binding | 0.871734119777931 | bayes_pls_golite062009 |
|
Region A: Residues: [40-79] |
1 11 21 31 41 51
| | | | | |
1 NKLEASKNNK PSDSGADANT TNEPSAENAP EVEQDPKCIT
|
|
Region B: Residues: [128-135] |
1 11 21 31 41 51
| | | | | |
1 RKPDYSSQ
|
| Detection Method: | |
| Confidence: | 7.03 |
| Match: | 1k7lA |
| Description: | Peroxisome proliferator activated receptor alpha, PPAR-alpha |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [248-353] |
1 11 21 31 41 51
| | | | | |
1 DFADAMAQST KNTGATSSPS PASATAAPAP PPPPPAPPAS VFEISNDTPA TSSDANKGGI 60
61 GAVFAELNQG ENITKGLKKV DKSQQTHKNP ELRQSSTVSS TGSKSG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| actin binding | 4.94933252861141 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 4.21664682046338 | bayes_pls_golite062009 |
| actin monomer binding | 2.04365563273836 | bayes_pls_golite062009 |
| binding | 1.57578562719958 | bayes_pls_golite062009 |
| adenylate cyclase binding | 1.13353932343086 | bayes_pls_golite062009 |
| enzyme binding | 0.705135358375 | bayes_pls_golite062009 |
| protein binding | 0.651719649953198 | bayes_pls_golite062009 |
|
Region A: Residues: [354-526] |
1 11 21 31 41 51
| | | | | |
1 PPPRPKKPST LKTKRPPRKE LVGNKWFIEN YENETESLVI DANKDESIFI GKCSQVLVQI 60
61 KGKVNAISLS ETESCSVVLD SSISGMDVIK SNKFGIQVNH SLPQISIDKS DGGNIYLSKE 120
121 SLNTEIYTSC STAINVNLPI GEDDDYVEFP IPEQMKHSFA DGKFKSAVFE HAG
|
| Detection Method: | |
| Confidence: | 920.9897 |
| Match: | 1k4zA_ |
| Description: | C-terminal domain of adenylylcyclase associated protein |
Matching Structure (courtesy of the PDB): |
|
