YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YNL134C
Organism: Saccharomyces cerevisiae
Length: 376 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL134C.

Description E-value Query
Range
Subject
Range
ADHX_SPAAU - Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1
0.0 [2..371] [1..374]
gi|2570190 - gi|2570190|dbj|BAA22979.1| alcohol dehydrogenase [Arabidopsis thaliana]
0.0 [2..371] [1..375]
ADHX_SAAHA - Alcohol dehydrogenase class-3 OS=Saara hardwickii PE=1 SV=1
0.0 [2..371] [1..371]
gi|2570182, gi|2... - gi|2570182|dbj|BAA22976.1| alcohol dehydrogenase [Arabidopsis halleri subsp. gemmifera], gi|2570176|...
0.0 [2..371] [1..375]
gi|6684357 - gi|6684357|gb|AAF23539.1|AF110441_1 alcohol dehydrogenase [Halimolobos perplexa var. lemhiensis]
0.0 [2..371] [1..375]

Back

Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASIPETMK AVVIENGKAV VKQDIPIPEL EEGFVLIKTV AVAGNPTDWK HIDFKIGPQG  60
   61 ALLGCDAAGQ IVKLGPNVDA ARFAIGDYIY GVIHGASVRF PSNGAFAEYS AISSETAYKP 120
  121 AREFRLCGKD KLPEGPVKSL EGAVSLPVSL TTAGMILTHS F

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [311-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTLPADPEYK EAAIKFIKFI NPKINDGEIH HIPVKVYKNG LDDIPQLLDD IKHGRNSGEK  60
   61 LVAVLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 1tehA_
Description: Alcohol dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 2.27962497742937 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.27417613545298 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 2.0836009784049 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
chaperone binding 0.983752799796442 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 0.644078151952473 bayes_pls_golite062009
binding 0.429102711245135 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [162-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLDMTWKPSK AQRDQPILFW GGATAVGQML IQLAKKLNGF SKIIVVASRK HEKLLKEYGA  60
   61 DELFDYHDAD VIEQIKKKYN NIPYLVDCVS NTETIQQVYK CAADDLDATV VQLTVLTEKD 120
  121 IKEEDRRQNV SIEGTLLYLI GGNDVPFGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 1tehA_
Description: Alcohol dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle