YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL122C
Organism:	Saccharomyces cerevisiae
Length:	115 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL122C.

Description	E-value	Query Range	Subject Range
gi\|49528264, gi\|... - gi\|50293037\|ref\|XP_448951.1\| unnamed protein product [Candida glabrata], gi\|49528264\|emb\|CAG61921.1\|... gi\|49528264 - gi\|49528264\|emb\|CAG61921.1\| unnamed protein product [Candida glabrata]	96.0	[0..52]	[114..32]
gi\|45185363, gi\|... - gi\|45185363\|ref\|NP_983080.1\| ABR133Wp [Ashbya gossypii ATCC 10895], gi\|44981052\|gb\|AAS50904.1\| ABR13... gi\|44981052 - gi\|44981052\|gb\|AAS50904.1\| ABR133Wp [Ashbya gossypii ATCC 10895]	89.0	[0..21]	[115..3]
gi\|50312241, gi\|... - gi\|50312241\|ref\|XP_456152.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645288\|emb\|CAG9886... gi\|49645288 - gi\|49645288\|emb\|CAG98860.1\| KLLA0F24068p [Kluyveromyces lactis]	85.0	[0..33]	[115..13]
gi\|50425313, gi\|... - gi\|50425313\|ref\|XP_461250.1\| hypothetical protein DEHA0F22088g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656919 - gi\|49656919\|emb\|CAG89639.1\| DEHA2F20746p [Debaryomyces hansenii]	50.0	[0..14]	[94..3]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISLHNKRQ RGDQNQNMSV FNVLKPLLKG SNSFKVKLNG FLFNNVSTIT IRTLMKTHKG  60
   61 TAKRWRRTGN TFKRGIAGRK HGNIGWSHRS LKALTGRKIA HPAYSKHLKR LLPYH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.54
Match:	2hgj7
Description:	No description for 2hgj7 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits