YRC Public Data Repository - Protein Structure Prediction

Protein:	TOM70
Organism:	Saccharomyces cerevisiae
Length:	617 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TOM70.

Description	E-value	Query Range	Subject Range
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	345.0	[0..33]	[610..13]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	336.0	[0..67]	[577..23]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	334.0	[0..24]	[615..76]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	334.0	[0..62]	[577..18]
gi\|74007684 - gi\|74007684\|ref\|XP_858918.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 11 ...	330.0	[0..62]	[577..18]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	330.0	[0..64]	[577..10]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFITRNKT AILATVAATG TAIGAYYYYN QLQQQQQRGK KNTINKDEKK DTKDSQKETE  60
   61 GAKKSTAPSN PPIYPVSSNG EPDFSNKANF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.309	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.309	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.305	d.14.1	Ribosomal protein S5 domain 2-like
View	Download	0.295	a.24.29	Description not found.
View	Download	0.263	a.2.1	GreA transcript cleavage protein, N-terminal domain
View	Download	0.248	a.7.14	Description not found.
View	Download	0.241	d.244.1	Description not found.
View	Download	0.238	a.24.9	alpha-catenin/vinculin
View	Download	0.226	a.61.1	Retroviral matrix proteins

Predicted Domain #2

Region A:
Residues: [91-617]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAEEKDKYAL ALKDKGNQFF RNKKYDDAIK YYNWALELKE DPVFYSNLSA CYVSVGDLKK  60
   61 VVEMSTKALE LKPDYSKVLL RRASANEGLG KFADAMFDLS VLSLNGDFND ASIEPMLERN 120
  121 LNKQAMSKLK EKFGDIDTAT ATPTELSTQP AKERKDKQEN LPSVTSMASF FGIFKPELTF 180
  181 ANYDESNEAD KELMNGLSNL YKRSPESYDK ADESFTKAAR LFEEQLDKNN EDEKLKEKLA 240
  241 ISLEHTGIFK FLKNDPLGAH EDIKKAIELF PRVNSYIYMA LIMADRNDST EYYNYFDKAL 300
  301 KLDSNNSSVY YHRGQMNFIL QNYDQAGKDF DKAKELDPEN IFPYIQLACL AYRENKFDDC 360
  361 ETLFSEAKRK FPEAPEVPNF FAEILTDKND FDKALKQYDL AIELENKLDG IYVGIAPLVG 420
  421 KATLLTRNPT VENFIEATNL LEKASKLDPR SEQAKIGLAQ MKLQQEDIDE AITLFEESAD 480
  481 LARTMEEKLQ AITFAEAAKV QQRIRSDPVL AKKIQETLAK LREQGLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.09691
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits