YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL115C
Organism:	Saccharomyces cerevisiae
Length:	644 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL115C.

Description	E-value	Query Range	Subject Range
gi\|51012705 - gi\|51012705\|gb\|AAT92646.1\| YNL115C [Saccharomyces cerevisiae]	820.0	[0..1]	[643..1]
gi\|49528258 - gi\|49528258\|emb\|CAG61915.1\| unnamed protein product [Candida glabrata] gi\|50293025, gi\|... - gi\|50293025\|ref\|XP_448945.1\| unnamed protein product [Candida glabrata], gi\|49528258\|emb\|CAG61915.1\|...	415.0	[0..26]	[637..50]
SPAC23C11.06c - hydrolase YDW6_SCHPO - Uncharacterized protein C23C11.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23C...	415.0	[0..93]	[618..54]
gi\|49645279 - gi\|49645279\|emb\|CAG98851.1\| KLLA0F23870p [Kluyveromyces lactis] gi\|50312223, gi\|... - gi\|50312223\|ref\|XP_456143.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645279\|emb\|CAG9885...	408.0	[0..8]	[637..34]
gi\|15162184, gi\|... - gi\|16119616\|ref\|NP_396322.1\| hypothetical protein AGR_pAT_561 [Agrobacterium tumefaciens str. C58], ...	218.0	[0..293]	[573..13]
gi\|111116465, gi... - gi\|111116465\|ref\|YP_709349.1\| 2-hydroxymuconic semialdehyde hydrolase [Pseudomonas putida], gi\|11103...	208.0	[0..318]	[574..1]
gi\|47078061 - gi\|47078061\|gb\|AAT09778.1\| XylF [Pseudomonas sp. ST41]	204.0	[0..318]	[574..1]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANGLDNDP ARTGMERTDI DSEHPEAQPL LNNNHRTLGA GSANGPAVNE GRDIESDGFI  60
   61 KDSLFQIRKG YRIFIHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKWILNILIL INTIWLVTTL ISDFFFNINI LFGFSNRYAS FNDLTLIFIS IIANSFNLWF  60
   61 NKLGLYSALD YSLNVTLCVL TLFNLALTYL IKYTRQRIGF VGTFTYLWTS FSFFIGAILD 120
  121 WYLLFYNNSI NEPLEERRID DANISTFNEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [228-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTNSTENRDR SQYGSGSPTP THRSQLVQNK HTLTEWVSIG FRNTIKFLIL IFFALFTLNT  60
   61 LLTTLDTYRL THKLPITVQS PSYEAFHYVD AAKTYQLHIT CYGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [332-644]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFDQENNTDL SENKKQPIIL FEHGGYDTGY LSATWIEELY HLDKIQRYCL YDRPGYGLSD  60
   61 SPPAPISIAM VAESLRYALI KDAKIKGPFT TVGYDLGGLF TRVFTAKNVD IVDSMMLVES 120
  121 WHEELLLKNY IQRLLPPGRG DGDDGDDGNG NDGDGRNHDK TWLPSEIERH NEFRLWWKGI 180
  181 WSSLGWRLQT SWLLAHHGSK ERIYGRDMKY QGRFLRSKFL ESVTSSILSY RDVTNNAESL 240
  241 QNVKTSIVSS KEMVKKSALW GDWQRDLTKI SHKTQEWKIV EGGHEIYKYG LGKQQTQEVL 300
  301 LRLIGELGKL TED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	2d0dA
Description:	No description for 2d0dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits