YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC19
Organism:	Saccharomyces cerevisiae
Length:	142 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC19.

Description	E-value	Query Range	Subject Range
RPC19 - RNA polymerase subunit AC19, common to RNA polymerases I and III gi\|190409101 - gi\|190409101\|gb\|EDV12366.1\| RNA polymerases I subunit [Saccharomyces cerevisiae RM11-1a] gi\|151944423 - gi\|151944423\|gb\|EDN62701.1\| AC19 [Saccharomyces cerevisiae YJM789] RPAC2_YEAST - DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	3.0E-40	[1..142]	[1..142]
POLR1D - polymerase (RNA) I polypeptide D, 16kDa ENSPTRT00000060269 - null gi\|208968663 - gi\|208968663\|dbj\|BAG74170.1\| polymerase (RNA) I polypeptide D, 16kDa [synthetic construct]	4.0E-34	[22..140]	[1..119]
RPAC2_MOUSE - DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus GN=Polr1d PE=1 SV=1	4.0E-34	[22..140]	[1..119]
rpc19 - DNA-directed RNA polymerase I and III subunit Rpc19 RPAC2_SCHPO - DNA-directed RNA polymerases I and III subunit RPAC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	9.0E-32	[30..139]	[5..113]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	4.0E-29	[39..123]	[1..92]
CE00225 - RNA Pol I\/III 16Kd polypeptide status:Confirmed UniProt:P34476 protein_id:CAA80165.1	2.0E-28	[6..140]	[4..140]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDIEQKKT ATEVTPQEPK HIQEEEEQDV DMTGDEEQEE EPDREKIKLL TQATSEDGTS  60
   61 ASFQIVEEDH TLGNALRYVI MKNPDVEFCG YSIPHPSENL LNIRIQTYGE TTAVDALQKG 120
  121 LKDLMDLCDV VESKFTEKIK SM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.144602
Match:	1k83K_
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits