Protein: | APP1 |
Organism: | Saccharomyces cerevisiae |
Length: | 587 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APP1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..587] | [1..587] |
|
0.0 | [187..494] | [195..501] |
|
0.0 | [187..494] | [195..501] |
|
9.0E-83 | [197..428] | [77..298] |
|
6.0E-63 | [269..433] | [151..314] |
Region A: Residues: [1-159] |
1 11 21 31 41 51 | | | | | | 1 MNSQGYDESS SSTAATSGPT SGDPRMGKKQ RFMNLIRTTK DVYIPNLTSS ISQKTMDGIR 60 61 STTNSFEGYN DLPMELPHNT TITYFPTYTT TNLVDPDGLS APRKDFETTV RCAVSYPGNP 120 121 TSRRNRWLLS LCKQYLRTGT AEADVAPVVP PHLEEDSGD |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.276 | a.118.8 | TPR-like |
View | Download | 0.248 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
View | Download | 0.276 | a.118.8 | TPR-like |
View | Download | 0.273 | a.118.8 | TPR-like |
View | Download | 0.273 | a.118.8 | TPR-like |
View | Download | 0.248 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
View | Download | 0.244 | d.224.1 | SufE-like |
View | Download | 0.244 | d.224.1 | SufE-like |
Region A: Residues: [160-474] |
1 11 21 31 41 51 | | | | | | 1 LNDSQSSIES SLSSKSENRY SHMGIQEEDV LNERIQGFLS KKVPNTPVVV DLLPKDKLRG 60 61 DTASFFGTTD SYGNLLIKAE TDFLPSKINI TLDTPIEGHA DPISETFPAN YVSPYGIGLI 120 121 SDIDDTIKHT GVTGDRRSMF RNVFIHDVQS WVIDGVPLWY KTLHDVADVD FFYVSNSPIQ 180 181 TFTLLKQYIC ANFPPGPIFL KQYSGNFFST IMTSSANRKI QPIANILKDF PKKKFILVGD 240 241 SGEHDLEAYT TTALQFPNQI LAIYIRCCSN SMSDVPSHDE EVMNEVNNII ELQQRPMQMT 300 301 KSTVRTRRRP PPPPI |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [475-587] |
1 11 21 31 41 51 | | | | | | 1 PSTQKPSLTE EQTESIRMSR RNKDENNAKR VAPPPLPNRQ LPNLDANTYY VPSSQNDYGM 60 61 YGAFMDKKAD EWKRRVMDSI QKLSNQDTTL MFFSDPALSL EDSIRRIREK YSN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.404 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.512 | c.23.1 | CheY-like |
View | Download | 0.512 | c.23.1 | CheY-like |
View | Download | 0.460 | c.23.1 | CheY-like |
View | Download | 0.460 | c.23.1 | CheY-like |
View | Download | 0.404 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.376 | c.23.1 | CheY-like |
View | Download | 0.374 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.374 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.351 | c.23.1 | CheY-like |
View | Download | 0.344 | c.23.1 | CheY-like |
View | Download | 0.334 | a.77.1 | DEATH domain |
View | Download | 0.328 | c.23.1 | CheY-like |
View | Download | 0.328 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.320 | c.23.1 | CheY-like |
View | Download | 0.317 | c.23.1 | CheY-like |
View | Download | 0.290 | a.118.8 | TPR-like |
View | Download | 0.276 | c.84.1 | Phosphoglucomutase, first 3 domains |
View | Download | 0.275 | a.118.8 | TPR-like |
View | Download | 0.265 | a.41.1 | Domain of poly(ADP-ribose) polymerase |
View | Download | 0.239 | c.23.1 | CheY-like |
View | Download | 0.236 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.232 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
View | Download | 0.220 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
View | Download | 0.215 | d.16.1 | FAD-linked reductases, C-terminal domain |
View | Download | 0.206 | a.40.1 | Calponin-homology domain, CH-domain |
View | Download | 0.204 | a.1.1 | Globin-like |